Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os05t0389300-01 | cytosol, nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G43810.1 | Os05t0389300-01 | AT5G48870.1 | 23221597 |
| AT2G43810.1 | Os05t0389300-01 | AT5G48870.1 | 23221597 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g078450.1.1 | Tomato | cytosol | 41.58 | 95.45 |
| Os04t0388900-01 | Rice | nucleus | 86.14 | 89.69 |
| Bra003391.1-P | Field mustard | cytosol | 78.22 | 86.81 |
| CDX67814 | Canola | cytosol | 78.22 | 86.81 |
| CDX98396 | Canola | cytosol | 78.22 | 86.81 |
| VIT_05s0094g00940.t01 | Wine grape | cytosol, nucleus, plastid | 77.23 | 85.71 |
| KXG30274 | Sorghum | plastid | 82.18 | 85.57 |
| PGSC0003DMT400021589 | Potato | nucleus | 76.24 | 84.62 |
| CDX89036 | Canola | cytosol, extracellular, nucleus | 72.28 | 83.91 |
| CDY45780 | Canola | cytosol, extracellular, nucleus | 76.24 | 83.7 |
| Bra014525.1-P | Field mustard | cytosol | 76.24 | 83.7 |
| CDY05977 | Canola | cytosol | 76.24 | 82.8 |
| Bra007478.1-P | Field mustard | cytosol | 76.24 | 82.8 |
| KRH00694 | Soybean | cytosol | 74.26 | 82.42 |
| KRH40501 | Soybean | nucleus | 74.26 | 82.42 |
| AT2G43810.1 | Thale cress | cytosol | 71.29 | 79.12 |
| GSMUA_Achr8P16430_001 | Banana | plastid | 83.17 | 65.12 |
| Os02t0177500-01 | Rice | nucleus | 30.69 | 36.05 |
| Os11t0657300-01 | Rice | nucleus | 30.69 | 36.05 |
Protein Annotations
| MapMan:16.4.3.6 | Gene3D:2.30.30.100 | EntrezGene:4329449 | EMBL:AK058487 | ProteinID:BAD23667.1 | ProteinID:BAS78852.1 |
| ProteinID:EEE57059.1 | GO:GO:0000398 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 |
| GO:GO:0005688 | GO:GO:0005730 | GO:GO:0005732 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0030490 | GO:GO:0046540 |
| InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | EnsemblPlantsGene:Os02g0510100 | EnsemblPlants:Os02t0510100-01 | PFAM:PF01423 |
| PIRSF:PIRSF006609 | PANTHER:PTHR11021 | UniProt:Q6K2E9 | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI00003B0701 |
| RefSeq:XP_015626012.1 | RefSeq:XP_015626013.1 | SEG:seg | : | : | : |
Description
CYCLOPHILIN 7Similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F). (Os02t0510100-01);Similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F). (Os02t0510100-02)
Coordinates
chr2:-:18231489..18235780
Molecular Weight (calculated)
10425.4 Da
IEP (calculated)
9.452
GRAVY (calculated)
-0.364
Length
101 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGGEKSGS GGGGGGGGGG AVKTPSDFLK SIRGRPVVVK LNSGVDYRGI LACLDGYMNI AMEQTEEYVN GQLKNKYGDA FIRGNNVLYI STSKRTLTDG
101: A
101: A
1: MSGVGEKASG TTKTPADFLK SIRGKPVVVK LNSGVDYRGI LTCLDGYMNI AMEQTEEYVN GQLKNTYGDA FVRGNNVLYI STTKGTLSDG A
Arabidopsis Description
LSM6BSm-like protein LSM36B [Source:UniProtKB/Swiss-Prot;Acc:O22823]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.