CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42315	cytosol, nucleus
KRH58439	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43810.1	KRH42315	AT5G48870.1	23221597
AT2G43810.1	KRH58439	AT5G48870.1	23221597
AT2G43810.1	KRH42315	AT5G48870.1	23221597
AT2G43810.1	KRH58439	AT5G48870.1	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40501	Soybean	nucleus	100.0	100.0
VIT_05s0094g00940.t01	Wine grape	cytosol, nucleus, plastid	93.41	93.41
PGSC0003DMT400021589	Potato	nucleus	93.41	93.41
Solyc10g078450.1.1	Tomato	cytosol	41.76	86.36
AT2G43810.1	Thale cress	cytosol	85.71	85.71
CDX89036	Canola	cytosol, extracellular, nucleus	80.22	83.91
Bra003391.1-P	Field mustard	cytosol	83.52	83.52
CDX67814	Canola	cytosol	83.52	83.52
CDX98396	Canola	cytosol	83.52	83.52
Bra014525.1-P	Field mustard	cytosol	83.52	82.61
CDY45780	Canola	cytosol, extracellular, nucleus	83.52	82.61
Bra007478.1-P	Field mustard	cytosol	83.52	81.72
CDY05977	Canola	cytosol	83.52	81.72
Zm00001d025239_P001	Maize	nucleus	82.42	78.95
GSMUA_Achr6P11930_001	Banana	cytosol	82.42	77.32
EES12036	Sorghum	plastid	82.42	77.32
KXG30274	Sorghum	plastid	80.22	75.26
Os04t0388900-01	Rice	nucleus	80.22	75.26
Os02t0510100-01	Rice	cytosol, nucleus, plastid	82.42	74.26
TraesCS2A01G284300.1	Wheat	nucleus	80.22	73.74
TraesCS2B01G301300.1	Wheat	plastid	80.22	73.74
TraesCS2D01G283200.1	Wheat	plastid	80.22	73.74
GSMUA_Achr8P16430_001	Banana	plastid	81.32	57.36
HORVU2Hr1G070000.3	Barley	plastid	80.22	52.9
KRH02869	Soybean	extracellular	28.57	33.33
KRG90335	Soybean	cytosol	29.67	30.68

Protein Annotations

EntrezGene:100306112	EntrezGene:100797765	MapMan:16.4.3.6	Gene3D:2.30.30.100	EMBL:ACUP02006038	EMBL:ACUP02011467
EnsemblPlantsGene:GLYMA_18G229600	GO:GO:0000398	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0005688	GO:GO:0005730	GO:GO:0005732	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0030490	GO:GO:0030529
GO:GO:0046540	UniProt:I1N3M5	EnsemblPlants:KRH00694	ProteinID:KRH00694	ProteinID:KRH00694.1	ProteinID:KRH00695.1
ProteinID:KRH40501.1	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm6/sSmF	PFAM:PF01423	PIRSF:PIRSF006609
PANTHER:PTHR11021	SMART:SM00651	SUPFAM:SSF50182	UniParc:UPI000233E2AF	:	:

Description

hypothetical protein

Coordinates

chr18:-:51859271..51861086

Molecular Weight (calculated)

9852.8 Da

IEP (calculated)

9.452

GRAVY (calculated)

-0.356

Length

91 amino acids

Sequence
(BLAST)

1: MSGTEKAGSG TTKTPADFLK SIRGRPVVVK LNSGVDYRGI LACLDGYMNI AMEQTEEYVN GQLKNKYGDA FIRGNNVLYI STSKRTLAEG A

Best Arabidopsis Sequence Match ( AT3G59810.3 )
(BLAST)

1: MSGVEEKVSG TTKTPADFLK SIRGRPVVVK LNSGVDYRGT LTCLDGYMNI AMEQTEEYVN GQLKNKYGDA FIRGNNVLYI STVNMTVADG A

Arabidopsis Description

LSM6ASm-like protein LSM6A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Z3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.