CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19467	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43810.1	EES19467	AT5G48870.1	23221597
AT2G43810.1	EES19467	AT5G48870.1	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025239_P001	Maize	nucleus	94.85	96.84
Solyc10g078450.1.1	Tomato	cytosol	43.3	95.45
TraesCS2D01G283200.1	Wheat	plastid	94.85	92.93
TraesCS2B01G301300.1	Wheat	plastid	94.85	92.93
Os04t0388900-01	Rice	nucleus	92.78	92.78
TraesCS2A01G284300.1	Wheat	nucleus	93.81	91.92
Bra003391.1-P	Field mustard	cytosol	80.41	85.71
CDX67814	Canola	cytosol	80.41	85.71
CDX98396	Canola	cytosol	80.41	85.71
CDX89036	Canola	cytosol, extracellular, nucleus	76.29	85.06
CDY45780	Canola	cytosol, extracellular, nucleus	80.41	84.78
Bra014525.1-P	Field mustard	cytosol	80.41	84.78
VIT_05s0094g00940.t01	Wine grape	cytosol, nucleus, plastid	79.38	84.62
KXG30274	Sorghum	plastid	84.54	84.54
CDY05977	Canola	cytosol	79.38	82.8
Bra007478.1-P	Field mustard	cytosol	79.38	82.8
KRH40501	Soybean	nucleus	77.32	82.42
KRH00694	Soybean	cytosol	77.32	82.42
PGSC0003DMT400021589	Potato	nucleus	77.32	82.42
AT2G43810.1	Thale cress	cytosol	72.16	76.92
HORVU2Hr1G070000.3	Barley	plastid	93.81	65.94
GSMUA_Achr8P16430_001	Banana	plastid	81.44	61.24
EES06368	Sorghum	cytosol	31.96	36.05
EES02360	Sorghum	cytosol	30.93	34.88

Protein Annotations

MapMan:16.4.3.6	Gene3D:2.30.30.100	EntrezGene:8070969	UniProt:C5YET4	EnsemblPlants:EES12036	ProteinID:EES12036
ProteinID:EES12036.1	GO:GO:0000398	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0005688	GO:GO:0005730	GO:GO:0005732	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0030490	GO:GO:0030529
GO:GO:0046540	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm6/sSmF	PFAM:PF01423	PIRSF:PIRSF006609
PANTHER:PTHR11021	SMART:SM00651	EnsemblPlantsGene:SORBI_3006G052400	SUPFAM:SSF50182	unigene:Sbi.18199	UniParc:UPI0001A87292
RefSeq:XP_002447708.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:38406223..38415675

Molecular Weight (calculated)

10251.2 Da

IEP (calculated)

9.452

GRAVY (calculated)

-0.352

Length

97 amino acids

Sequence
(BLAST)

1: MSTGGADKPG SGSGGGAVKT PSDFLKSIRG RPVVVKLNSG VDYRGILACL DGYMNIAMEQ TEEYVNGQLK NKYGDAFIRG NNVLYISTSK RTLTDGA

Best Arabidopsis Sequence Match ( AT2G43810.1 )
(BLAST)

1: MSGVGEKASG TTKTPADFLK SIRGKPVVVK LNSGVDYRGI LTCLDGYMNI AMEQTEEYVN GQLKNTYGDA FVRGNNVLYI STTKGTLSDG A

Arabidopsis Description

LSM6BSm-like protein LSM36B [Source:UniProtKB/Swiss-Prot;Acc:O22823]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.