Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0177500-01 | Rice | nucleus | 97.67 | 97.67 |
| Os11t0657300-01 | Rice | nucleus | 96.51 | 96.51 |
| EES06368 | Sorghum | cytosol | 95.35 | 95.35 |
| GSMUA_Achr10P... | Banana | cytosol | 94.19 | 94.19 |
| GSMUA_Achr5P16380_001 | Banana | cytosol | 93.02 | 93.02 |
| VIT_00s0220g00030.t01 | Wine grape | cytosol | 90.7 | 88.64 |
| KRG90335 | Soybean | cytosol | 90.7 | 88.64 |
| CDY39189 | Canola | cytosol | 88.37 | 86.36 |
| Bra010295.1-P | Field mustard | cytosol | 88.37 | 86.36 |
| Bra024093.1-P | Field mustard | cytosol | 88.37 | 86.36 |
| CDX72224 | Canola | cytosol | 88.37 | 86.36 |
| CDY14182 | Canola | cytosol | 87.21 | 85.23 |
| Solyc10g081370.1.1 | Tomato | nucleus | 84.88 | 82.95 |
| PGSC0003DMT400072262 | Potato | cytosol | 84.88 | 82.95 |
| AT2G14285.1 | Thale cress | cytosol, extracellular, nucleus | 58.14 | 81.97 |
| TraesCS7A01G496000.1 | Wheat | cytosol, extracellular, plastid | 81.4 | 80.46 |
| AT4G30220.2 | Thale cress | cytosol | 86.05 | 77.08 |
| Bra024094.1-P | Field mustard | cytosol | 79.07 | 75.56 |
| CDY65066 | Canola | mitochondrion | 82.56 | 66.98 |
| CDY71897 | Canola | cytosol, extracellular | 83.72 | 59.02 |
| CDY65068 | Canola | extracellular | 83.72 | 51.43 |
| CDY03542 | Canola | extracellular | 88.37 | 49.35 |
| EES12036 | Sorghum | plastid | 34.88 | 30.93 |
| KXG30274 | Sorghum | plastid | 33.72 | 29.9 |
Protein Annotations
| MapMan:16.4.2.6 | Gene3D:2.30.30.100 | EntrezGene:8078782 | UniProt:C5XMR4 | EnsemblPlants:EES02360 | ProteinID:EES02360 |
| ProteinID:EES02360.1 | GO:GO:0000387 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 |
| GO:GO:0005685 | GO:GO:0005732 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030529 | GO:GO:0071013 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | PFAM:PF01423 | PIRSF:PIRSF006609 | PANTHER:PTHR11021 | PANTHER:PTHR11021:SF0 |
| SMART:SM00651 | EnsemblPlantsGene:SORBI_3003G044400 | SUPFAM:SSF50182 | InterPro:Sm_F | UniParc:UPI00016FEDD8 | RefSeq:XP_002457240.1 |
Description
hypothetical protein
Coordinates
chr3:-:4079303..4082022
Molecular Weight (calculated)
9687.6 Da
IEP (calculated)
4.211
GRAVY (calculated)
-0.228
Length
86 amino acids
Sequence
(BLAST)
(BLAST)
1: MATVPVNPKP FLNNLTGKTV IVKLKWGMEY KGYLTSVDSY MNLQLANTEE YIDGQFSGNL GEILIRCNNV LYLRGVPEDT EIEDAE
1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD
Arabidopsis Description
RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.