CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024093.1-P	Field mustard	cytosol	100.0	100.0
CDX72224	Canola	cytosol	100.0	100.0
CDY14182	Canola	cytosol	98.86	98.86
AT2G14285.1	Thale cress	cytosol, extracellular, nucleus	67.05	96.72
GSMUA_Achr10P...	Banana	cytosol	86.36	88.37
EES02360	Sorghum	cytosol	86.36	88.37
AT4G30220.2	Thale cress	cytosol	95.45	87.5
Zm00001d053754_P001	Maize	cytosol	85.23	87.21
Os11t0657300-01	Rice	nucleus	85.23	87.21
Os02t0177500-01	Rice	nucleus	85.23	87.21
GSMUA_Achr5P16380_001	Banana	cytosol	85.23	87.21
KRG90335	Soybean	cytosol	86.36	86.36
VIT_00s0220g00030.t01	Wine grape	cytosol	84.09	84.09
Solyc10g081370.1.1	Tomato	nucleus	79.55	79.55
PGSC0003DMT400072262	Potato	cytosol	79.55	79.55
CDY65066	Canola	mitochondrion	93.18	77.36
TraesCS7A01G496000.1	Wheat	cytosol, extracellular, plastid	75.0	75.86
CDY71897	Canola	cytosol, extracellular	95.45	68.85
TraesCS6B01G180100.1	Wheat	cytosol	79.55	61.95
TraesCS6D01G141900.1	Wheat	cytosol	79.55	61.95
CDY65068	Canola	extracellular	95.45	60.0
CDY03542	Canola	extracellular	100.0	57.14
HORVU6Hr1G030410.1	Barley	cytosol	31.82	56.0
HORVU6Hr1G056390.1	Barley	cytosol	34.09	46.88
Zm00001d015460_P001	Maize	cytosol, plastid	82.95	36.87
CDX67814	Canola	cytosol	37.5	36.26
CDX98396	Canola	cytosol	37.5	36.26
CDY45780	Canola	cytosol, extracellular, nucleus	37.5	35.87
CDX89036	Canola	cytosol, extracellular, nucleus	35.23	35.63
CDY05977	Canola	cytosol	37.5	35.48

Protein Annotations

MapMan:16.4.2.6	Gene3D:2.30.30.100	GO:A0A078C7R2	UniProt:A0A078C7R2	EnsemblPlants:CDY39189	ProteinID:CDY39189
ProteinID:CDY39189.1	GO:GO:0000387	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0005732	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	GO:GO:0016043	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00067393001	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf
InterPro:Lsm6/sSmF	PFAM:PF01423	PIRSF:PIRSF006609	PANTHER:PTHR11021	PANTHER:PTHR11021:SF8	SMART:SM00651
SUPFAM:SSF50182	InterPro:Sm_F	UniParc:UPI0002540DB9	:	:	:

Description

BnaA03g50010DBnaA03g50010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078C7R2]

Coordinates

chrLK032443:-:182..1452

Molecular Weight (calculated)

9806.8 Da

IEP (calculated)

4.123

GRAVY (calculated)

-0.236

Length

88 amino acids

Sequence
(BLAST)

1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELGDAEQD

Best Arabidopsis Sequence Match ( AT4G30220.1 )
(BLAST)

1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD

Arabidopsis Description

RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.