Factsheet for Zm00001d015460_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053754_P001	Maize	cytosol	42.42	97.67
Os11t0657300-01	Rice	nucleus	41.41	95.35
EES06368	Sorghum	cytosol	40.91	94.19
Os02t0177500-01	Rice	nucleus	40.91	94.19
VIT_00s0220g00030.t01	Wine grape	cytosol	38.38	86.36
CDY14182	Canola	cytosol	37.37	84.09
Bra010295.1-P	Field mustard	cytosol	36.87	82.95
Bra024093.1-P	Field mustard	cytosol	36.87	82.95
CDX72224	Canola	cytosol	36.87	82.95
CDY39189	Canola	cytosol	36.87	82.95
AT2G14285.1	Thale cress	cytosol, extracellular, nucleus	25.25	81.97
Solyc10g081370.1.1	Tomato	nucleus	35.86	80.68
PGSC0003DMT400072262	Potato	cytosol	35.35	79.55
TraesCS7A01G496000.1	Wheat	cytosol, extracellular, plastid	34.85	79.31
AT4G30220.2	Thale cress	cytosol	38.38	79.17
KRH02869	Soybean	extracellular	30.81	78.21
Bra024094.1-P	Field mustard	cytosol	33.84	74.44
TraesCS6B01G180100.1	Wheat	cytosol	39.39	69.03
TraesCS6D01G141900.1	Wheat	cytosol	38.89	68.14
CDY65066	Canola	mitochondrion	35.86	66.98
GSMUA_Achr7P16400_001	Banana	cytosol	20.71	60.29
CDY71897	Canola	cytosol, extracellular	35.86	58.2
HORVU6Hr1G030410.1	Barley	cytosol	13.64	54.0
CDY03542	Canola	extracellular	40.4	51.95
CDY65068	Canola	extracellular	36.36	51.43
HORVU6Hr1G056390.1	Barley	cytosol	15.66	48.44
Zm00001d025239_P001	Maize	nucleus	15.66	32.63
Zm00001d016571_P001	Maize	cytosol	7.07	32.56
Zm00001d016569_P001	Maize	plastid	14.14	17.61

Protein Annotations

EntrezGene:100284147	EntrezGene:100285502	MapMan:16.4.2.6	Gene3D:2.30.30.100	UniProt:A0A1D6H288	ProteinID:AQK68975.1
GO:GO:0000387	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005732
GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987
GO:GO:0016043	GO:GO:0019013	GO:GO:0030529	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm6/sSmF
PFAM:PF01423	PANTHER:PTHR11021	PANTHER:PTHR11021:SF0	SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_F
UniParc:UPI00084322B0	EnsemblPlantsGene:Zm00001d015460	EnsemblPlants:Zm00001d015460_P001	EnsemblPlants:Zm00001d015460_T001	:	:

Description

Probable small nuclear ribonucleoprotein F

Coordinates

chr5:+:91587913..91590987

Molecular Weight (calculated)

22159.9 Da

IEP (calculated)

5.679

GRAVY (calculated)

0.096

Length

198 amino acids

Sequence
(BLAST)

001: MAAFLSLFMD VTASDLSHTY QKFRPVVSPL PVPLKYHIIA AVVSANLIQR SFVSLQNAGV RLASVIPYPN PTGSVLPFQL MAESYHLVDQ WTSVIISYRD
101: PKNEMSLVIS RFVQTVPVNP KPFLNNLTGK PVIVKLKWGM EYKGYLASVD SYMNLQLANT EEYIDGQFSG NLGEILIRCN NVMYLRGVPE DAEIEDAE

Best Arabidopsis Sequence Match ( AT4G30220.2 )
(BLAST)

1: MAFVCMCVLQ TIPVNPKPFL NNLTGKTVIV KLKWGMEYKG FLASVDSYMN LQLGNTEEYI DGQLTGNLGE ILIRCNNVLY VRGVPEDEEL EDADQD

Arabidopsis Description

RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.