Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH02869 | Soybean | extracellular | 55.88 | 48.72 |
| HORVU6Hr1G030410.1 | Barley | cytosol | 35.29 | 48.0 |
| GSMUA_Achr10P... | Banana | cytosol | 57.35 | 45.35 |
| GSMUA_Achr5P16380_001 | Banana | cytosol | 57.35 | 45.35 |
| Zm00001d053754_P001 | Maize | cytosol | 55.88 | 44.19 |
| TraesCS7A01G496000.1 | Wheat | cytosol, extracellular, plastid | 55.88 | 43.68 |
| EES06368 | Sorghum | cytosol | 54.41 | 43.02 |
| HORVU6Hr1G056390.1 | Barley | cytosol | 36.76 | 39.06 |
| TraesCS6B01G180100.1 | Wheat | cytosol | 57.35 | 34.51 |
| TraesCS6D01G141900.1 | Wheat | cytosol | 57.35 | 34.51 |
| Zm00001d015460_P001 | Maize | cytosol, plastid | 60.29 | 20.71 |
| GSMUA_Achr6P11930_001 | Banana | cytosol | 25.0 | 17.53 |
| GSMUA_Achr8P16430_001 | Banana | plastid | 23.53 | 12.4 |
Protein Annotations
| Gene3D:2.30.30.100 | MapMan:35.2 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 |
| GO:GO:0005732 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 |
| GO:GO:0009987 | GO:GO:0030529 | EnsemblPlantsGene:GSMUA_Achr7G16400_001 | EnsemblPlants:GSMUA_Achr7P16400_001 | EnsemblPlants:GSMUA_Achr7T16400_001 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | UniProt:M0TI27 | PFAM:PF01423 | PIRSF:PIRSF006609 | PANTHER:PTHR11021 |
| PANTHER:PTHR11021:SF0 | SUPFAM:SSF50182 | UniParc:UPI0002951769 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G16400_001]
Coordinates
chr7:+:14031068..14031690
Molecular Weight (calculated)
7608.4 Da
IEP (calculated)
10.116
GRAVY (calculated)
-0.219
Length
68 amino acids
Sequence
(BLAST)
(BLAST)
1: MRNLLGKGKK CPCLDTNPAT SHFLTVPVNP KPFLKNLTGK PVIVKSKWGM EYKGYLVSVD SYINLQID
1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD
Arabidopsis Description
RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.