Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG90335 | Soybean | cytosol | 85.9 | 76.14 |
| Zm00001d053754_P001 | Maize | cytosol | 80.77 | 73.26 |
| EES06368 | Sorghum | cytosol | 79.49 | 72.09 |
| TraesCS7A01G496000.1 | Wheat | cytosol, extracellular, plastid | 74.36 | 66.67 |
| GSMUA_Achr7P16400_001 | Banana | cytosol | 48.72 | 55.88 |
| HORVU6Hr1G030410.1 | Barley | cytosol | 34.62 | 54.0 |
| TraesCS6B01G180100.1 | Wheat | cytosol | 76.92 | 53.1 |
| TraesCS6D01G141900.1 | Wheat | cytosol | 76.92 | 53.1 |
| HORVU6Hr1G056390.1 | Barley | cytosol | 38.46 | 46.88 |
| Zm00001d015460_P001 | Maize | cytosol, plastid | 78.21 | 30.81 |
| KRH00694 | Soybean | cytosol | 33.33 | 28.57 |
| KRH40501 | Soybean | nucleus | 33.33 | 28.57 |
Protein Annotations
| MapMan:16.4.2.6 | Gene3D:2.30.30.100 | EMBL:ACUP02010328 | EnsemblPlantsGene:GLYMA_17G063100 | GO:GO:0000387 | GO:GO:0000398 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005685 | GO:GO:0005732 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030529 | GO:GO:0071013 | UniProt:I1MSQ9 | EnsemblPlants:KRH02869 | ProteinID:KRH02869 | ProteinID:KRH02869.1 |
| InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | PFAM:PF01423 | PIRSF:PIRSF006609 | PANTHER:PTHR11021 |
| PANTHER:PTHR11021:SF8 | SMART:SM00651 | SUPFAM:SSF50182 | InterPro:Sm_F | UniParc:UPI00023D52CC | : |
Description
hypothetical protein
Coordinates
chr17:-:4865292..4866821
Molecular Weight (calculated)
8832.8 Da
IEP (calculated)
8.202
GRAVY (calculated)
-0.241
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MATIPVNPKP FLNNLTGKPV IVKLKWGMEY KGYLVSVDSY MNLQLANTEE YIEGQFTGNL GEILIRNDRK NQCHCVTA
1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD
Arabidopsis Description
RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.