Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G141900.1 | Wheat | cytosol | 94.69 | 94.69 |
| Os02t0177500-01 | Rice | nucleus | 69.91 | 91.86 |
| Zm00001d053754_P001 | Maize | cytosol | 69.03 | 90.7 |
| Os11t0657300-01 | Rice | nucleus | 69.03 | 90.7 |
| EES06368 | Sorghum | cytosol | 67.26 | 88.37 |
| VIT_00s0220g00030.t01 | Wine grape | cytosol | 65.49 | 84.09 |
| TraesCS7B01G401200.1 | Wheat | cytosol, extracellular, plastid | 62.83 | 81.61 |
| CDY39189 | Canola | cytosol | 61.95 | 79.55 |
| Bra010295.1-P | Field mustard | cytosol | 61.95 | 79.55 |
| CDX72224 | Canola | cytosol | 61.95 | 79.55 |
| Bra024093.1-P | Field mustard | cytosol | 61.95 | 79.55 |
| CDY14182 | Canola | cytosol | 61.06 | 78.41 |
| Solyc10g081370.1.1 | Tomato | nucleus | 61.06 | 78.41 |
| PGSC0003DMT400072262 | Potato | cytosol | 61.06 | 78.41 |
| AT2G14285.1 | Thale cress | cytosol, extracellular, nucleus | 41.59 | 77.05 |
| KRH02869 | Soybean | extracellular | 53.1 | 76.92 |
| AT4G30220.2 | Thale cress | cytosol | 62.83 | 73.96 |
| Bra024094.1-P | Field mustard | cytosol | 56.64 | 71.11 |
| CDY65066 | Canola | mitochondrion | 59.29 | 63.21 |
| GSMUA_Achr7P16400_001 | Banana | cytosol | 34.51 | 57.35 |
| CDY71897 | Canola | cytosol, extracellular | 59.29 | 54.92 |
| CDY65068 | Canola | extracellular | 61.06 | 49.29 |
| CDY03542 | Canola | extracellular | 61.95 | 45.45 |
| Zm00001d015460_P001 | Maize | cytosol, plastid | 69.03 | 39.39 |
| TraesCS2B01G301300.1 | Wheat | plastid | 27.43 | 31.31 |
Protein Annotations
| MapMan:16.4.2.6 | Gene3D:2.30.30.100 | GO:GO:0000387 | GO:GO:0000398 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005732 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF |
| PFAM:PF01423 | PIRSF:PIRSF006609 | PANTHER:PTHR11021 | PANTHER:PTHR11021:SF0 | SMART:SM00651 | SUPFAM:SSF50182 |
| InterPro:Sm_F | EnsemblPlantsGene:TraesCS6B01G180100 | EnsemblPlants:TraesCS6B01G180100.1 | TIGR:cd01722 | : | : |
Description
No Description!
Coordinates
chr6B:+:200310980..200314016
Molecular Weight (calculated)
12613.2 Da
IEP (calculated)
4.319
GRAVY (calculated)
-0.050
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYTFTADGV RVHAAEVVMY PTPLLATKAT VPVNPKPFLN NLTGKSVIVK LKWGMEYKGY LVSVDSYMNL QLADTEEYID GQFSGNLGDI LIRCNNVMYM
101: RGVPEDTEIE DAV
101: RGVPEDTEIE DAV
1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD
Arabidopsis Description
RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.