CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053754_P001	Maize	cytosol	96.51	96.51
EES02360	Sorghum	cytosol	95.35	95.35
TraesCS7A01G496000.1	Wheat	cytosol, extracellular, plastid	81.4	80.46
KRH02869	Soybean	extracellular	72.09	79.49
TraesCS6B01G180100.1	Wheat	cytosol	88.37	67.26
TraesCS6D01G141900.1	Wheat	cytosol	88.37	67.26
HORVU6Hr1G030410.1	Barley	cytosol	33.72	58.0
GSMUA_Achr7P16400_001	Banana	cytosol	43.02	54.41
HORVU6Hr1G056390.1	Barley	cytosol	36.05	48.44
Zm00001d015460_P001	Maize	cytosol, plastid	94.19	40.91
EES12036	Sorghum	plastid	36.05	31.96
KXG30274	Sorghum	plastid	34.88	30.93

Protein Annotations

MapMan:16.4.2.6	Gene3D:2.30.30.100	EntrezGene:8077205	UniProt:C5XW93	EnsemblPlants:EES06368	ProteinID:EES06368
ProteinID:EES06368.1	GO:GO:0000387	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0005685	GO:GO:0005732	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009987	GO:GO:0016043	GO:GO:0030529	GO:GO:0071013	InterPro:LSM_dom_euk/arc
InterPro:LSM_dom_sf	InterPro:Lsm6/sSmF	PFAM:PF01423	PIRSF:PIRSF006609	PANTHER:PTHR11021	PANTHER:PTHR11021:SF0
SMART:SM00651	EnsemblPlantsGene:SORBI_3004G062400	SUPFAM:SSF50182	unigene:Sbi.11852	InterPro:Sm_F	UniParc:UPI0001A85B28
RefSeq:XP_002453392.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:5032454..5035025

Molecular Weight (calculated)

9672.6 Da

IEP (calculated)

4.302

GRAVY (calculated)

-0.129

Length

86 amino acids

Sequence
(BLAST)

1: MATVPVNPKP FLNNLTGKFV IVKLKWGMEY KGYLASVDSY MNLQLANTEE YIDGQFSGNL GEILIRCNNV LYLRGVPEDA EIQDAE

Best Arabidopsis Sequence Match ( AT4G30220.1 )
(BLAST)

1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD

Arabidopsis Description

RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.