Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72224 | Canola | cytosol | 68.85 | 95.45 |
| CDY39189 | Canola | cytosol | 68.85 | 95.45 |
| CDY14182 | Canola | cytosol | 68.85 | 95.45 |
| AT2G14285.1 | Thale cress | cytosol, extracellular, nucleus | 46.72 | 93.44 |
| AT4G30220.2 | Thale cress | cytosol | 67.21 | 85.42 |
| CDY65068 | Canola | extracellular | 97.54 | 85.0 |
| GSMUA_Achr10P... | Banana | cytosol | 59.02 | 83.72 |
| EES02360 | Sorghum | cytosol | 59.02 | 83.72 |
| Zm00001d053754_P001 | Maize | cytosol | 58.2 | 82.56 |
| Os11t0657300-01 | Rice | nucleus | 58.2 | 82.56 |
| Os02t0177500-01 | Rice | nucleus | 58.2 | 82.56 |
| GSMUA_Achr5P16380_001 | Banana | cytosol | 58.2 | 82.56 |
| KRG90335 | Soybean | cytosol | 59.02 | 81.82 |
| VIT_00s0220g00030.t01 | Wine grape | cytosol | 57.38 | 79.55 |
| CDY65066 | Canola | mitochondrion | 65.57 | 75.47 |
| PGSC0003DMT400072262 | Potato | cytosol | 54.1 | 75.0 |
| Solyc10g081370.1.1 | Tomato | nucleus | 54.1 | 75.0 |
| TraesCS7A01G496000.1 | Wheat | cytosol, extracellular, plastid | 50.82 | 71.26 |
| TraesCS6B01G180100.1 | Wheat | cytosol | 54.92 | 59.29 |
| TraesCS6D01G141900.1 | Wheat | cytosol | 54.92 | 59.29 |
| CDY03542 | Canola | extracellular | 68.85 | 54.55 |
| HORVU6Hr1G030410.1 | Barley | cytosol | 22.13 | 54.0 |
| HORVU6Hr1G056390.1 | Barley | cytosol | 23.77 | 45.31 |
| Zm00001d015460_P001 | Maize | cytosol, plastid | 58.2 | 35.86 |
| CDX67814 | Canola | cytosol | 26.23 | 35.16 |
| CDX98396 | Canola | cytosol | 26.23 | 35.16 |
| CDY45780 | Canola | cytosol, extracellular, nucleus | 26.23 | 34.78 |
| CDX89036 | Canola | cytosol, extracellular, nucleus | 24.59 | 34.48 |
| CDY05977 | Canola | cytosol | 26.23 | 34.41 |
Protein Annotations
| MapMan:16.4.2.6 | Gene3D:2.30.30.100 | UniProt:A0A078K1V4 | EnsemblPlants:CDY71897 | ProteinID:CDY71897 | ProteinID:CDY71897.1 |
| GO:GO:0000387 | GO:GO:0000398 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005681 | GO:GO:0005732 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00022342001 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | PFAM:PF01423 |
| PANTHER:PTHR11021 | PANTHER:PTHR11021:SF8 | SMART:SM00651 | SUPFAM:SSF50182 | InterPro:Sm_F | UniParc:UPI0004EDEA68 |
Description
BnaUnng04700DBnaUnng04700D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K1V4]
Coordinates
chrLK048012:+:3..2033
Molecular Weight (calculated)
13527.4 Da
IEP (calculated)
4.481
GRAVY (calculated)
0.000
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: KTHTIPVNPK PFLNNLTGKT VIVKLKWGME YKGFLASVDT YMNLQLGNTE EYIDGQLTGN LGEILIRCIN VLYVRGVPED EELGDAEQDL PVPVADFSVT
101: GMECLSFLAI VSRPSYCGPK YI
101: GMECLSFLAI VSRPSYCGPK YI
1: MAFVCMCVLQ TIPVNPKPFL NNLTGKTVIV KLKWGMEYKG FLASVDSYMN LQLGNTEEYI DGQLTGNLGE ILIRCNNVLY VRGVPEDEEL EDADQD
Arabidopsis Description
RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.