CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72224	Canola	cytosol	77.36	93.18
CDY14182	Canola	cytosol	77.36	93.18
CDY39189	Canola	cytosol	77.36	93.18
AT2G14285.1	Thale cress	cytosol, extracellular, nucleus	52.83	91.8
Bra024094.1-P	Field mustard	cytosol	71.7	84.44
AT4G30220.2	Thale cress	cytosol	76.42	84.38
EES02360	Sorghum	cytosol	66.98	82.56
Zm00001d053754_P001	Maize	cytosol	66.04	81.4
Os11t0657300-01	Rice	nucleus	66.04	81.4
Os02t0177500-01	Rice	nucleus	66.04	81.4
GSMUA_Achr10P...	Banana	cytosol	66.04	81.4
GSMUA_Achr5P16380_001	Banana	cytosol	65.09	80.23
KRG90335	Soybean	cytosol	66.04	79.55
VIT_00s0220g00030.t01	Wine grape	cytosol	64.15	77.27
PGSC0003DMT400072262	Potato	cytosol	60.38	72.73
Solyc10g081370.1.1	Tomato	nucleus	60.38	72.73
TraesCS7A01G496000.1	Wheat	cytosol, extracellular, plastid	57.55	70.11
CDY71897	Canola	cytosol, extracellular	75.47	65.57
TraesCS6D01G141900.1	Wheat	cytosol	63.21	59.29
TraesCS6B01G180100.1	Wheat	cytosol	63.21	59.29
CDY65068	Canola	extracellular	76.42	57.86
CDY03542	Canola	extracellular	77.36	53.25
HORVU6Hr1G030410.1	Barley	cytosol	24.53	52.0
HORVU6Hr1G056390.1	Barley	cytosol	27.36	45.31
CDX67814	Canola	cytosol	32.08	37.36
CDX98396	Canola	cytosol	32.08	37.36
CDY45780	Canola	cytosol, extracellular, nucleus	32.08	36.96
CDX89036	Canola	cytosol, extracellular, nucleus	30.19	36.78
CDY05977	Canola	cytosol	32.08	36.56
Zm00001d015460_P001	Maize	cytosol, plastid	66.98	35.86

Protein Annotations

MapMan:16.4.2.6	Gene3D:2.30.30.100	UniProt:A0A078JH85	EnsemblPlants:CDY65066	ProteinID:CDY65066	ProteinID:CDY65066.1
GO:GO:0000387	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0005732	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00044119001	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm6/sSmF	PFAM:PF01423
PIRSF:PIRSF006609	PANTHER:PTHR11021	PANTHER:PTHR11021:SF8	SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_F
UniParc:UPI0004EE469A	:	:	:	:	:

Description

BnaAnng20030DBnaAnng20030D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JH85]

Coordinates

chrLK034647:+:1871..2999

Molecular Weight (calculated)

12073.5 Da

IEP (calculated)

5.051

GRAVY (calculated)

-0.197

Length

106 amino acids

Sequence
(BLAST)

001: RFVLPPTLRF VSSFHHSWLP YIPVNPKPFL NNLTGKTVIV KLKWGMEYKG FLASVDSYMN LQLGNTEEYI DGQLTGNLGE ILIRCNNVLY VQSVPEDKEL
101: GDAEQD

Best Arabidopsis Sequence Match ( AT4G30220.1 )
(BLAST)

1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD

Arabidopsis Description

RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.