Factsheet for PGSC0003DMT400072262

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g081370.1.1	Tomato	nucleus	98.86	98.86
GSMUA_Achr5P16380_001	Banana	cytosol	85.23	87.21
Os11t0657300-01	Rice	nucleus	84.09	86.05
Os02t0177500-01	Rice	nucleus	84.09	86.05
VIT_00s0220g00030.t01	Wine grape	cytosol	85.23	85.23
GSMUA_Achr10P...	Banana	cytosol	82.95	84.88
EES02360	Sorghum	cytosol	82.95	84.88
Zm00001d053754_P001	Maize	cytosol	81.82	83.72
KRG90335	Soybean	cytosol	81.82	81.82
Bra010295.1-P	Field mustard	cytosol	79.55	79.55
CDX72224	Canola	cytosol	79.55	79.55
Bra024093.1-P	Field mustard	cytosol	79.55	79.55
CDY39189	Canola	cytosol	79.55	79.55
AT2G14285.1	Thale cress	cytosol, extracellular, nucleus	54.55	78.69
CDY14182	Canola	cytosol	78.41	78.41
TraesCS7A01G496000.1	Wheat	cytosol, extracellular, plastid	72.73	73.56
AT4G30220.2	Thale cress	cytosol	79.55	72.92
Bra024094.1-P	Field mustard	cytosol	71.59	70.0
TraesCS6B01G180100.1	Wheat	cytosol	78.41	61.06
TraesCS6D01G141900.1	Wheat	cytosol	78.41	61.06
CDY65066	Canola	mitochondrion	72.73	60.38
CDY71897	Canola	cytosol, extracellular	75.0	54.1
HORVU6Hr1G030410.1	Barley	cytosol	29.55	52.0
CDY65068	Canola	extracellular	75.0	47.14
HORVU6Hr1G056390.1	Barley	cytosol	34.09	46.88
CDY03542	Canola	extracellular	79.55	45.45
Zm00001d015460_P001	Maize	cytosol, plastid	79.55	35.35
PGSC0003DMT400021589	Potato	nucleus	28.41	27.47

Protein Annotations

EntrezGene:102600295	MapMan:16.4.2.6	Gene3D:2.30.30.100	GO:GO:0000387	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0005732	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0016043	GO:GO:0030529	InterPro:LSM_dom_euk/arc
InterPro:LSM_dom_sf	InterPro:Lsm6/sSmF	UniProt:M1CPZ1	PFAM:PF01423	EnsemblPlantsGene:PGSC0003DMG401028122	PGSC:PGSC0003DMG401028122
EnsemblPlants:PGSC0003DMT400072262	PIRSF:PIRSF006609	PANTHER:PTHR11021	PANTHER:PTHR11021:SF0	SMART:SM00651	SUPFAM:SSF50182
InterPro:Sm_F	UniParc:UPI000296BEF0	RefSeq:XP_006339211.1	:	:	:

Description

Small nuclear ribonucleoprotein f [Source:PGSC_GENE;Acc:PGSC0003DMG401028122]

Coordinates

chr10:-:56582230..56585423

Molecular Weight (calculated)

9832.7 Da

IEP (calculated)

4.295

GRAVY (calculated)

-0.241

Length

88 amino acids

Sequence
(BLAST)

1: MATVPVNPKP FLNNLTGKHV MVKLKWGLEY KGYLVSVDSY MNLQLANAEE FTDGVSSGSL GEILIRCNNV LYLRGVPEDE ELEDADRD

Best Arabidopsis Sequence Match ( AT4G30220.1 )
(BLAST)

1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD

Arabidopsis Description

RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.