Factsheet for VIT_00s0220g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P16380_001	Banana	cytosol	93.18	95.35
GSMUA_Achr10P...	Banana	cytosol	92.05	94.19
Os11t0657300-01	Rice	nucleus	90.91	93.02
Os02t0177500-01	Rice	nucleus	90.91	93.02
KRG90335	Soybean	cytosol	90.91	90.91
Zm00001d053754_P001	Maize	cytosol	88.64	90.7
EES02360	Sorghum	cytosol	88.64	90.7
Solyc10g081370.1.1	Tomato	nucleus	86.36	86.36
AT2G14285.1	Thale cress	cytosol, extracellular, nucleus	59.09	85.25
PGSC0003DMT400072262	Potato	cytosol	85.23	85.23
Bra024093.1-P	Field mustard	cytosol	84.09	84.09
Bra010295.1-P	Field mustard	cytosol	84.09	84.09
CDX72224	Canola	cytosol	84.09	84.09
CDY39189	Canola	cytosol	84.09	84.09
CDY14182	Canola	cytosol	82.95	82.95
TraesCS7A01G496000.1	Wheat	cytosol, extracellular, plastid	77.27	78.16
AT4G30220.2	Thale cress	cytosol	84.09	77.08
Bra024094.1-P	Field mustard	cytosol	78.41	76.67
TraesCS6B01G180100.1	Wheat	cytosol	84.09	65.49
TraesCS6D01G141900.1	Wheat	cytosol	84.09	65.49
CDY65066	Canola	mitochondrion	77.27	64.15
CDY71897	Canola	cytosol, extracellular	79.55	57.38
HORVU6Hr1G030410.1	Barley	cytosol	30.68	54.0
CDY65068	Canola	extracellular	79.55	50.0
HORVU6Hr1G056390.1	Barley	cytosol	35.23	48.44
CDY03542	Canola	extracellular	84.09	48.05
Zm00001d015460_P001	Maize	cytosol, plastid	86.36	38.38
VIT_05s0094g00940.t01	Wine grape	cytosol, nucleus, plastid	30.68	29.67

Protein Annotations

EntrezGene:100263985	wikigene:100263985	MapMan:16.4.2.6	Gene3D:2.30.30.100	ProteinID:CBI23345	ProteinID:CBI23345.3
UniProt:D7SYP2	EMBL:FN595254	GO:GO:0000387	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0005685	GO:GO:0005732	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0016043	GO:GO:0030529	GO:GO:0071013
EntrezGene:LOC100263985	wikigene:LOC100263985	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm6/sSmF	PFAM:PF01423
PIRSF:PIRSF006609	PANTHER:PTHR11021	PANTHER:PTHR11021:SF0	SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_F
TIGR:TC58402	UniParc:UPI0001986007	ArrayExpress:VIT_00s0220g00030	EnsemblPlantsGene:VIT_00s0220g00030	EnsemblPlants:VIT_00s0220g00030.t01	unigene:Vvi.8951
RefSeq:XP_002272246	RefSeq:XP_002272246.1	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:14140999..14144381

Molecular Weight (calculated)

9995.0 Da

IEP (calculated)

4.182

GRAVY (calculated)

-0.305

Length

88 amino acids

Sequence
(BLAST)

1: MATVPLNPKP FLNNLTGKPV IVKLKWGMEY KGYLVSVDSY MNLQLANSEE YIDGQFTGNL GEILIRCNNV LYLRGVPEDE EIEEADRD

Best Arabidopsis Sequence Match ( AT4G30220.1 )
(BLAST)

1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD

Arabidopsis Description

RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.