CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010295.1-P	Field mustard	cytosol	57.14	100.0
CDX72224	Canola	cytosol	57.14	100.0
CDY39189	Canola	cytosol	57.14	100.0
CDY14182	Canola	cytosol	56.49	98.86
AT2G14285.1	Thale cress	cytosol, extracellular, nucleus	38.31	96.72
AT4G30220.2	Thale cress	cytosol	55.19	88.54
GSMUA_Achr10P...	Banana	cytosol	49.35	88.37
EES02360	Sorghum	cytosol	49.35	88.37
Zm00001d053754_P001	Maize	cytosol	48.7	87.21
Os11t0657300-01	Rice	nucleus	48.7	87.21
Os02t0177500-01	Rice	nucleus	48.7	87.21
GSMUA_Achr5P16380_001	Banana	cytosol	48.7	87.21
KRG90335	Soybean	cytosol	49.35	86.36
VIT_00s0220g00030.t01	Wine grape	cytosol	48.05	84.09
PGSC0003DMT400072262	Potato	cytosol	45.45	79.55
Solyc10g081370.1.1	Tomato	nucleus	45.45	79.55
CDY65066	Canola	mitochondrion	53.25	77.36
TraesCS7A01G496000.1	Wheat	cytosol, extracellular, plastid	42.86	75.86
CDY71897	Canola	cytosol, extracellular	54.55	68.85
TraesCS6B01G180100.1	Wheat	cytosol	45.45	61.95
TraesCS6D01G141900.1	Wheat	cytosol	45.45	61.95
CDY65068	Canola	extracellular	54.55	60.0
HORVU6Hr1G030410.1	Barley	cytosol	18.18	56.0
HORVU6Hr1G056390.1	Barley	cytosol	19.48	46.88
Zm00001d015460_P001	Maize	cytosol, plastid	51.95	40.4
CDX98396	Canola	cytosol	21.43	36.26
CDX67814	Canola	cytosol	21.43	36.26
CDY45780	Canola	cytosol, extracellular, nucleus	21.43	35.87
CDX89036	Canola	cytosol, extracellular, nucleus	20.13	35.63
CDY05977	Canola	cytosol	21.43	35.48

Protein Annotations

MapMan:16.4.2.6	Gene3D:2.30.30.100	EnsemblPlants:CDY03542	ProteinID:CDY03542	ProteinID:CDY03542.1	GO:GO:0000387
GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0005732	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
EnsemblPlantsGene:GSBRNA2T00116247001	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm6/sSmF	PFAM:PF01423	PANTHER:PTHR11021
PANTHER:PTHR11021:SF8	SMART:SM00651	SUPFAM:SSF50182	InterPro:Sm_F	UniParc:UPI0004EE2BFA	:

Description

BnaC03g68010D

Coordinates

chrLK031944:+:92808..96855

Molecular Weight (calculated)

17374.1 Da

IEP (calculated)

8.433

GRAVY (calculated)

-0.242

Length

154 amino acids

Sequence
(BLAST)

001: MSLFKFIITL WVTFNGPLEK YHEAHTVAVL AKNLKIPETK NPISRDRSRR KAIPILLDSS LRSPKPMATI PVNPKPFLNN LTGKTVIVKL KWGMEYKGFL
101: ASVDSYMNLQ LGNTEEYIDG QLTGNLGEIL IRCNNVLYVR GVPEDEELGD AEQD

Best Arabidopsis Sequence Match ( AT4G30220.1 )
(BLAST)

1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD

Arabidopsis Description

RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.