Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010295.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY39189 | Canola | cytosol | 100.0 | 100.0 |
| AT2G14285.1 | Thale cress | cytosol, extracellular, nucleus | 67.05 | 96.72 |
| EES02360 | Sorghum | cytosol | 86.36 | 88.37 |
| GSMUA_Achr10P... | Banana | cytosol | 86.36 | 88.37 |
| AT4G30220.2 | Thale cress | cytosol | 95.45 | 87.5 |
| Zm00001d053754_P001 | Maize | cytosol | 85.23 | 87.21 |
| Os11t0657300-01 | Rice | nucleus | 85.23 | 87.21 |
| Os02t0177500-01 | Rice | nucleus | 85.23 | 87.21 |
| GSMUA_Achr5P16380_001 | Banana | cytosol | 85.23 | 87.21 |
| KRG90335 | Soybean | cytosol | 86.36 | 86.36 |
| Bra024094.1-P | Field mustard | cytosol | 87.5 | 85.56 |
| VIT_00s0220g00030.t01 | Wine grape | cytosol | 84.09 | 84.09 |
| PGSC0003DMT400072262 | Potato | cytosol | 79.55 | 79.55 |
| Solyc10g081370.1.1 | Tomato | nucleus | 79.55 | 79.55 |
| TraesCS7A01G496000.1 | Wheat | cytosol, extracellular, plastid | 75.0 | 75.86 |
| TraesCS6B01G180100.1 | Wheat | cytosol | 79.55 | 61.95 |
| TraesCS6D01G141900.1 | Wheat | cytosol | 79.55 | 61.95 |
| HORVU6Hr1G030410.1 | Barley | cytosol | 31.82 | 56.0 |
| HORVU6Hr1G056390.1 | Barley | cytosol | 34.09 | 46.88 |
| Zm00001d015460_P001 | Maize | cytosol, plastid | 82.95 | 36.87 |
| Bra003391.1-P | Field mustard | cytosol | 37.5 | 36.26 |
| Bra014525.1-P | Field mustard | cytosol | 37.5 | 35.87 |
| Bra007478.1-P | Field mustard | cytosol | 37.5 | 35.48 |
Protein Annotations
| MapMan:16.4.2.6 | Gene3D:2.30.30.100 | EnsemblPlantsGene:Bra024093 | EnsemblPlants:Bra024093.1 | EnsemblPlants:Bra024093.1-P | GO:GO:0000387 |
| GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005732 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030529 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | UniProt:M4E5N9 | PFAM:PF01423 |
| PIRSF:PIRSF006609 | PANTHER:PTHR11021 | PANTHER:PTHR11021:SF8 | SMART:SM00651 | SUPFAM:SSF50182 | InterPro:Sm_F |
| UniParc:UPI0002540DB9 | : | : | : | : | : |
Description
AT4G30220 (E=6e-046) RUXF | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
Coordinates
chrA03:-:27692573..27693520
Molecular Weight (calculated)
9806.8 Da
IEP (calculated)
4.123
GRAVY (calculated)
-0.236
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELGDAEQD
1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD
Arabidopsis Description
RUXFSmall nuclear ribonucleoprotein F [Source:UniProtKB/TrEMBL;Acc:F4JPK5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.