Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr8P00430_001 | cytosol, nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G43810.1 | GSMUA_Achr8P00430_001 | AT5G48870.1 | 23221597 |
| AT2G43810.1 | GSMUA_Achr8P00430_001 | AT5G48870.1 | 23221597 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g078450.1.1 | Tomato | cytosol | 41.24 | 90.91 |
| CDX89036 | Canola | cytosol, extracellular, nucleus | 76.29 | 85.06 |
| Bra014525.1-P | Field mustard | cytosol | 79.38 | 83.7 |
| CDY45780 | Canola | cytosol, extracellular, nucleus | 79.38 | 83.7 |
| Bra003391.1-P | Field mustard | cytosol | 78.35 | 83.52 |
| CDX67814 | Canola | cytosol | 78.35 | 83.52 |
| CDX98396 | Canola | cytosol | 78.35 | 83.52 |
| VIT_05s0094g00940.t01 | Wine grape | cytosol, nucleus, plastid | 77.32 | 82.42 |
| KRH40501 | Soybean | nucleus | 77.32 | 82.42 |
| KRH00694 | Soybean | cytosol | 77.32 | 82.42 |
| CDY05977 | Canola | cytosol | 78.35 | 81.72 |
| Bra007478.1-P | Field mustard | cytosol | 78.35 | 81.72 |
| PGSC0003DMT400021589 | Potato | nucleus | 76.29 | 81.32 |
| AT2G43810.1 | Thale cress | cytosol | 71.13 | 75.82 |
| GSMUA_Achr8P16430_001 | Banana | plastid | 83.51 | 62.79 |
| GSMUA_Achr5P16380_001 | Banana | cytosol | 34.02 | 38.37 |
| GSMUA_Achr10P... | Banana | cytosol | 31.96 | 36.05 |
| GSMUA_Achr7P16400_001 | Banana | cytosol | 17.53 | 25.0 |
Protein Annotations
| MapMan:16.4.3.6 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 |
| GO:GO:0005732 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 |
| GO:GO:0009987 | GO:GO:0030529 | EnsemblPlantsGene:GSMUA_Achr6G11930_001 | EnsemblPlants:GSMUA_Achr6P11930_001 | EnsemblPlants:GSMUA_Achr6T11930_001 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | UniProt:M0T691 | PFAM:PF01423 | PIRSF:PIRSF006609 | PANTHER:PTHR11021 |
| SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI000294811F | SEG:seg | : | : |
Description
U6 snRNA-associated Sm-like protein LSm6 [Source:GMGC_GENE;Acc:GSMUA_Achr6G11930_001]
Coordinates
chr6:-:7909883..7913770
Molecular Weight (calculated)
10167.1 Da
IEP (calculated)
9.452
GRAVY (calculated)
-0.352
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MSTGGGGEKV GGGGSGSAKT PSDFLKSIRG RPVVVKLNSG VDYRGILACL DGYMNIAMEQ TEEYVNGQLK NKYGDAFIRG NNVLYISTSK RTIADGG
1: MSGVEEKVSG TTKTPADFLK SIRGRPVVVK LNSGVDYRGT LTCLDGYMNI AMEQTEEYVN GQLKNKYGDA FIRGNNVLYI STVNMTVADG A
Arabidopsis Description
LSM6ASm-like protein LSM6A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Z3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.