Factsheet for GSMUA_Achr8P16430_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr8P00430_001	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43810.1	GSMUA_Achr8P00430_001	AT5G48870.1	23221597
AT2G43810.1	GSMUA_Achr8P00430_001	AT5G48870.1	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078450.1.1	Tomato	cytosol	31.78	93.18
GSMUA_Achr6P11930_001	Banana	cytosol	62.79	83.51
Os02t0510100-01	Rice	cytosol, nucleus, plastid	65.12	83.17
Zm00001d025239_P001	Maize	nucleus	60.47	82.11
Os04t0388900-01	Rice	nucleus	61.24	81.44
EES12036	Sorghum	plastid	61.24	81.44
Bra003391.1-P	Field mustard	cytosol	57.36	81.32
KRH40501	Soybean	nucleus	57.36	81.32
KRH00694	Soybean	cytosol	57.36	81.32
CDX98396	Canola	cytosol	57.36	81.32
CDX67814	Canola	cytosol	57.36	81.32
CDX89036	Canola	cytosol, extracellular, nucleus	54.26	80.46
CDY45780	Canola	cytosol, extracellular, nucleus	57.36	80.43
Bra014525.1-P	Field mustard	cytosol	57.36	80.43
VIT_05s0094g00940.t01	Wine grape	cytosol, nucleus, plastid	56.59	80.22
CDY05977	Canola	cytosol	57.36	79.57
Bra007478.1-P	Field mustard	cytosol	57.36	79.57
PGSC0003DMT400021589	Potato	nucleus	55.81	79.12
KXG30274	Sorghum	plastid	58.91	78.35
TraesCS2D01G283200.1	Wheat	plastid	59.69	77.78
TraesCS2B01G301300.1	Wheat	plastid	59.69	77.78
TraesCS2A01G284300.1	Wheat	nucleus	59.69	77.78
AT2G43810.1	Thale cress	cytosol	51.94	73.63
HORVU2Hr1G070000.3	Barley	plastid	59.69	55.8
GSMUA_Achr5P16380_001	Banana	cytosol	24.81	37.21
GSMUA_Achr10P...	Banana	cytosol	23.26	34.88
GSMUA_Achr7P16400_001	Banana	cytosol	12.4	23.53

Protein Annotations

MapMan:16.4.3.6	Gene3D:2.30.30.100	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005732	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr8G16430_001	EnsemblPlants:GSMUA_Achr8P16430_001	EnsemblPlants:GSMUA_Achr8T16430_001	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm6/sSmF
UniProt:M0TQZ6	PFAM:PF01423	PANTHER:PTHR11021	SMART:SM00651	SUPFAM:SSF50182	UniParc:UPI000296E827
SEG:seg	:	:	:	:	:

Description

U6 snRNA-associated Sm-like protein LSm6 [Source:GMGC_GENE;Acc:GSMUA_Achr8G16430_001]

Coordinates

chr8:+:14258079..14260088

Molecular Weight (calculated)

14154.2 Da

IEP (calculated)

9.399

GRAVY (calculated)

0.031

Length

129 amino acids

Sequence
(BLAST)

001: MNGGSGGSGS GGGGSGAGKM PTNFLKSIRG RPVVVKLNSG VDYRGILACL DPYMNIAMEQ TEEYVNGQLK NKYGDAFIRG NNVLYISTSK RTLADGCVLV
101: EWIINYFEIY VQVIRQICFF FLLFFTKGK

Best Arabidopsis Sequence Match ( AT2G43810.1 )
(BLAST)

1: MSGVGEKASG TTKTPADFLK SIRGKPVVVK LNSGVDYRGI LTCLDGYMNI AMEQTEEYVN GQLKNTYGDA FVRGNNVLYI STTKGTLSDG A

Arabidopsis Description

LSM6BSm-like protein LSM36B [Source:UniProtKB/Swiss-Prot;Acc:O22823]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.