Factsheet for Os04t0388900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0389300-01	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43810.1	Os05t0389300-01	AT5G48870.1	23221597
AT2G43810.1	Os05t0389300-01	AT5G48870.1	23221597

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078450.1.1	Tomato	cytosol	42.27	93.18
EES12036	Sorghum	plastid	92.78	92.78
Zm00001d025239_P001	Maize	nucleus	89.69	91.58
TraesCS2D01G283200.1	Wheat	plastid	90.72	88.89
TraesCS2B01G301300.1	Wheat	plastid	90.72	88.89
TraesCS2A01G284300.1	Wheat	nucleus	90.72	88.89
Os02t0510100-01	Rice	cytosol, nucleus, plastid	89.69	86.14
CDX89036	Canola	cytosol, extracellular, nucleus	75.26	83.91
Bra003391.1-P	Field mustard	cytosol	78.35	83.52
CDX98396	Canola	cytosol	78.35	83.52
CDX67814	Canola	cytosol	78.35	83.52
CDY45780	Canola	cytosol, extracellular, nucleus	78.35	82.61
Bra014525.1-P	Field mustard	cytosol	78.35	82.61
CDY05977	Canola	cytosol	77.32	80.65
Bra007478.1-P	Field mustard	cytosol	77.32	80.65
KRH00694	Soybean	cytosol	75.26	80.22
KRH40501	Soybean	nucleus	75.26	80.22
PGSC0003DMT400021589	Potato	nucleus	75.26	80.22
VIT_05s0094g00940.t01	Wine grape	cytosol, nucleus, plastid	75.26	80.22
AT2G43810.1	Thale cress	cytosol	70.1	74.73
HORVU2Hr1G070000.3	Barley	plastid	90.72	63.77
GSMUA_Achr8P16430_001	Banana	plastid	81.44	61.24
Os02t0177500-01	Rice	nucleus	31.96	36.05
Os11t0657300-01	Rice	nucleus	31.96	36.05

Protein Annotations

MapMan:16.4.3.6	Gene3D:2.30.30.100	EntrezGene:4335668	EMBL:AK063224	ProteinID:BAF14548.1	ProteinID:BAS88946.1
ProteinID:EEE60895.1	GO:GO:0000398	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0005688	GO:GO:0005730	GO:GO:0005732	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0030490	GO:GO:0046540
InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf	InterPro:Lsm6/sSmF	EnsemblPlantsGene:Os04g0388900	EnsemblPlants:Os04t0388900-01	PFAM:PF01423
PIRSF:PIRSF006609	PANTHER:PTHR11021	UniProt:Q0JDN9	SMART:SM00651	SUPFAM:SSF50182	UniParc:UPI0000DD904C
RefSeq:XP_015636054.1	SEG:seg	:	:	:	:

Description

Similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F). (Os04t0388900-01)

Coordinates

chr4:-:19134370..19139579

Molecular Weight (calculated)

10239.2 Da

IEP (calculated)

9.024

GRAVY (calculated)

-0.367

Length

97 amino acids

Sequence
(BLAST)

1: MSTGGGADKS GGGGGGAVKT PSDFLKSIRG RPVVVKLNSG VDYRGILACL DGYMNIAMEQ TEEYVNGQLK NKYGDAFIRG NNVLYISTSK RTLTDDA

Best Arabidopsis Sequence Match ( AT2G43810.1 )
(BLAST)

1: MSGVGEKASG TTKTPADFLK SIRGKPVVVK LNSGVDYRGI LTCLDGYMNI AMEQTEEYVN GQLKNTYGDA FVRGNNVLYI STTKGTLSDG A

Arabidopsis Description

LSM6BSm-like protein LSM36B [Source:UniProtKB/Swiss-Prot;Acc:O22823]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.