Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g078450.1.1 | Tomato | cytosol | 17.61 | 63.64 |
| Zm00001d016571_P001 | Maize | cytosol | 16.35 | 60.47 |
| CDX89036 | Canola | cytosol, extracellular, nucleus | 27.67 | 50.57 |
| Bra003391.1-P | Field mustard | cytosol | 28.3 | 49.45 |
| CDX67814 | Canola | cytosol | 28.3 | 49.45 |
| CDX98396 | Canola | cytosol | 28.3 | 49.45 |
| Bra014525.1-P | Field mustard | cytosol | 28.3 | 48.91 |
| CDY45780 | Canola | cytosol, extracellular, nucleus | 28.3 | 48.91 |
| Bra007478.1-P | Field mustard | cytosol | 28.3 | 48.39 |
| CDY05977 | Canola | cytosol | 28.3 | 48.39 |
| Zm00001d025239_P001 | Maize | nucleus | 28.3 | 47.37 |
| AT3G59810.2 | Thale cress | cytosol | 26.42 | 46.15 |
| Zm00001d053754_P001 | Maize | cytosol | 17.61 | 32.56 |
| Zm00001d015460_P001 | Maize | cytosol, plastid | 17.61 | 14.14 |
Protein Annotations
| EnsemblPlants:Zm00001d016569_P001 | EnsemblPlants:Zm00001d016569_T001 | EnsemblPlantsGene:Zm00001d016569 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0005575 |
| GO:GO:0005732 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:LSM_dom_euk/arc |
| InterPro:LSM_dom_sf | InterPro:Lsm6/sSmF | PANTHER:PTHR11021 | PANTHER:PTHR11021:SF1 | PFAM:PF01423 | ProteinID:AQK71172.1 |
| SEG:seg | SUPFAM:SSF50182 | UniParc:UPI000842BDD8 | UniProt:A0A1D6H8X7 | MapMan:16.4.3.6 | : |
Description
Sm-like protein LSM6A
Coordinates
chr5:-:167821302..167823310
Molecular Weight (calculated)
17486.0 Da
IEP (calculated)
5.929
GRAVY (calculated)
-0.298
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASTALLDP EVAPAPAKPE PSLPSCAGAF RIDFRFSARL GGLSDGSCSR SLTEPSGTAR EQWLMELEPI RMLEPEPQNK LCTAPRTVWR RPLSHAVYRR
101: MQTMPVYADA RVGALGILAC LDGYMNIAMQ QTEEYVNGQL KNKYGDAFIR GNDGADYMV
101: MQTMPVYADA RVGALGILAC LDGYMNIAMQ QTEEYVNGQL KNKYGDAFIR GNDGADYMV
1: MSGVEEKVSG TTKTPADFLK SIRGRPVVVK LNSGVDYRGT LTCLDGYMNI AMEQTEEYVN GQLKNKYGDA FIRGNNVLYI STVNMTVADG A
Arabidopsis Description
LSM6ASm-like protein LSM6A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Z3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.