Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029869_P001 | Maize | mitochondrion | 85.14 | 82.08 |
| Os10t0554001-01 | Rice | cytosol | 50.0 | 81.32 |
| KXG38947 | Sorghum | mitochondrion | 83.45 | 77.19 |
| TraesCS1D01G214000.1 | Wheat | mitochondrion, plastid | 66.55 | 68.17 |
| TraesCS1A01G210700.1 | Wheat | mitochondrion, plastid | 66.89 | 67.58 |
| TraesCS1B01G224700.1 | Wheat | mitochondrion, plastid | 66.55 | 67.24 |
| HORVU1Hr1G053950.1 | Barley | mitochondrion, plastid | 66.55 | 67.01 |
| GSMUA_Achr5P15290_001 | Banana | nucleus | 42.91 | 50.0 |
| GSMUA_Achr7P07110_001 | Banana | cytosol | 44.59 | 47.83 |
| Solyc08g079010.1.1 | Tomato | cytosol | 25.34 | 47.47 |
| GSMUA_Achr2P10020_001 | Banana | cytosol | 42.57 | 47.01 |
| GSMUA_Achr4P30380_001 | Banana | cytosol | 43.92 | 45.94 |
| GSMUA_Achr4P27010_001 | Banana | plastid | 43.92 | 45.45 |
| GSMUA_Achr1P01700_001 | Banana | nucleus | 44.93 | 45.08 |
| GSMUA_Achr5P13520_001 | Banana | cytosol, mitochondrion, peroxisome | 43.58 | 43.73 |
| Zm00001d017504_P001 | Maize | mitochondrion | 42.23 | 42.66 |
| KRH57359 | Soybean | cytosol | 38.18 | 39.51 |
| KRH28045 | Soybean | mitochondrion | 37.16 | 38.6 |
| CDY63658 | Canola | cytosol | 36.15 | 38.49 |
| KRH04088 | Soybean | cytosol | 37.84 | 38.49 |
| VIT_02s0154g00220.t01 | Wine grape | cytosol | 37.16 | 38.46 |
| AT4G12450.1 | Thale cress | cytosol | 35.81 | 38.27 |
| CDY16714 | Canola | cytosol | 35.81 | 38.13 |
| Bra029455.1-P | Field mustard | cytosol | 35.81 | 38.13 |
| KRH77393 | Soybean | mitochondrion | 36.49 | 38.03 |
| CDY42181 | Canola | cytosol | 32.77 | 37.6 |
| CDX76365 | Canola | cytosol | 32.43 | 37.21 |
| Bra020842.1-P | Field mustard | cytosol | 32.43 | 37.21 |
| PGSC0003DMT400012224 | Potato | nucleus | 37.5 | 37.12 |
| AT1G62520.1 | Thale cress | nucleus | 34.8 | 36.79 |
| AT4G22560.1 | Thale cress | cytosol, plastid | 32.09 | 35.98 |
| CDY12954 | Canola | nucleus | 31.42 | 35.23 |
| Bra027038.1-P | Field mustard | cytosol, plastid | 31.42 | 35.23 |
| CDY19564 | Canola | nucleus | 31.42 | 35.23 |
| KRH37293 | Soybean | plastid | 15.2 | 29.22 |
| Zm00001d026684_P001 | Maize | nucleus | 29.05 | 20.53 |
| Zm00001d028537_P001 | Maize | endoplasmic reticulum, plasma membrane | 30.41 | 19.48 |
| Zm00001d004497_P001 | Maize | nucleus, plastid | 28.38 | 18.3 |
| Zm00001d012605_P001 | Maize | nucleus | 30.74 | 18.16 |
| Zm00001d024883_P001 | Maize | nucleus | 31.08 | 17.97 |
| Zm00001d053006_P001 | Maize | nucleus | 25.68 | 17.92 |
| Zm00001d043243_P001 | Maize | nucleus | 29.39 | 17.23 |
| Zm00001d014485_P001 | Maize | nucleus, plastid | 24.32 | 16.44 |
| Zm00001d004822_P001 | Maize | nucleus, plastid | 15.88 | 13.47 |
Protein Annotations
| EnsemblPlants:Zm00001d047106_P001 | EnsemblPlants:Zm00001d047106_T001 | EnsemblPlantsGene:Zm00001d047106 | EntrezGene:103640242 | Gene3D:3.90.228.10 | PANTHER:PTHR31681 |
| PANTHER:PTHR31681:SF6 | ProteinID:AQL05618.1 | SEG:seg | SUPFAM:SSF56399 | UniParc:UPI00022201EA | UniProt:K7VY82 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
zinc finger (C2H2 type) family protein
Coordinates
chr9:+:118799414..118800304
Molecular Weight (calculated)
30510.8 Da
IEP (calculated)
10.530
GRAVY (calculated)
-0.053
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAWVRSLS CRSSYAMTDA AIAPSPAKKP PPPPPLPFPC ATAAAADVMD AVAYAQRARR KKMEGQRLAR EPRPRPKKKP KPMANDAGAE ALSTPSPAPV
101: SSAFLTMAEL PEGHSSRRVV ELIFASGWGG AGSPELSPSP PPSVEALFRV RSAPRAVARF EEARAAAARA RGAAARCGAD GNEMMRFQCR APGPGGVFGA
201: GVATCRLGAS ASAVRTFACS GAAHASAAAA AAAVGRRAML VCRVIAGRVC PANYPRHGQG QSSAAAAYDS VDMGDGELVV LDSRAVLPCF LIIYKV
101: SSAFLTMAEL PEGHSSRRVV ELIFASGWGG AGSPELSPSP PPSVEALFRV RSAPRAVARF EEARAAAARA RGAAARCGAD GNEMMRFQCR APGPGGVFGA
201: GVATCRLGAS ASAVRTFACS GAAHASAAAA AAAVGRRAML VCRVIAGRVC PANYPRHGQG QSSAAAAYDS VDMGDGELVV LDSRAVLPCF LIIYKV
001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL
Arabidopsis Description
Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.