Factsheet for Bra027038.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12954	Canola	nucleus	98.86	98.86
AT1G62520.1	Thale cress	nucleus	85.61	80.71
Solyc08g079010.1.1	Tomato	cytosol	34.85	58.23
VIT_02s0154g00220.t01	Wine grape	cytosol	57.95	53.5
Bra020842.1-P	Field mustard	cytosol	51.14	52.33
KRH28045	Soybean	mitochondrion	56.44	52.28
KRH77393	Soybean	mitochondrion	55.3	51.41
KRH04088	Soybean	cytosol	56.44	51.2
KRH57359	Soybean	cytosol	54.92	50.7
Bra029455.1-P	Field mustard	cytosol	53.03	50.36
PGSC0003DMT400012224	Potato	nucleus	54.55	48.16
Os10t0554001-01	Rice	cytosol	30.3	43.96
GSMUA_Achr2P10020_001	Banana	cytosol	43.94	43.28
GSMUA_Achr5P15290_001	Banana	nucleus	40.53	42.13
KRH37293	Soybean	plastid	24.24	41.56
TraesCS5A01G536800.1	Wheat	cytosol	29.92	41.15
GSMUA_Achr7P07110_001	Banana	cytosol	42.42	40.58
GSMUA_Achr4P30380_001	Banana	cytosol	43.18	40.28
GSMUA_Achr4P27010_001	Banana	plastid	43.56	40.21
GSMUA_Achr1P01700_001	Banana	nucleus	43.94	39.32
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	39.77	35.59
TraesCS6B01G276600.1	Wheat	plastid	37.5	35.36
TraesCS6D01G230200.1	Wheat	plastid	37.5	35.36
TraesCS6A01G248100.1	Wheat	plastid	36.74	35.02
Zm00001d017504_P001	Maize	mitochondrion	38.64	34.81
HORVU6Hr1G063400.2	Barley	plastid	36.74	34.52
KXG31078	Sorghum	plastid	39.39	32.91
Zm00001d047106_P001	Maize	plastid	35.23	31.42
Os02t0661600-00	Rice	mitochondrion	36.36	31.37
TraesCS1D01G214000.1	Wheat	mitochondrion, plastid	34.09	31.14
TraesCS1B01G224700.1	Wheat	mitochondrion, plastid	34.47	31.06
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	34.09	30.72
HORVU1Hr1G053950.1	Barley	mitochondrion, plastid	34.09	30.61
Zm00001d029869_P001	Maize	mitochondrion	35.23	30.29
TraesCS4B01G369900.1	Wheat	plastid	35.23	29.71
TraesCS4D01G361200.1	Wheat	plastid	34.47	29.55
KXG38947	Sorghum	mitochondrion	34.85	28.75
Bra026366.1-P	Field mustard	nucleus	36.36	22.54
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	31.44	22.31
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	31.44	22.02
Bra019849.1-P	Field mustard	cytosol, mitochondrion	27.27	20.11
Bra014094.1-P	Field mustard	plastid	31.82	20.1
Bra022735.1-P	Field mustard	nucleus	35.98	20.08
Bra015598.1-P	Field mustard	plastid	31.44	19.81
Bra015824.1-P	Field mustard	nucleus	32.2	18.36
Bra008218.1-P	Field mustard	nucleus	30.68	18.16

Protein Annotations

EnsemblPlants:Bra027038.1	EnsemblPlants:Bra027038.1-P	EnsemblPlantsGene:Bra027038	Gene3D:3.90.228.10	PANTHER:PTHR31681	PANTHER:PTHR31681:SF12
SEG:seg	SUPFAM:SSF56399	UniParc:UPI0002542564	UniProt:M4EE27	MapMan:15.5.15	:

Description

AT1G62520 (E=5e-094) | unknown protein

Coordinates

chrA09:-:7817268..7818062

Molecular Weight (calculated)

29201.0 Da

IEP (calculated)

10.285

GRAVY (calculated)

-0.528

Length

264 amino acids

Sequence
(BLAST)

001: MSSGWVKSWQ CKSKAFDDVY NPSPIHRMSS YSCRRSTQNL KDVINTKNPK PKPKPKKQES DPVSTPSTRI RSSVVRDPLL PTLTELAEGH QSRNVVEIIF
101: QTSWGPKPFP GRIDMIFKVQ NGSKTLTRFE EYREAVKTKS VGKSREENAR SVADGNETMR FYCLGPSYGG GAWGILGGKG GGASIYTFAG SCMAHDKAGG
201: GKGRKAMLVC RVIAGRVMKR NELKYDSVDS DVRSRFDSLS GGDGELLVFD TRAVLPCFLI VYRL

Best Arabidopsis Sequence Match ( AT1G62520.1 )
(BLAST)

001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL

Arabidopsis Description

Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.