Factsheet for Bra015824.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47503	Canola	nucleus	92.87	98.62
CDX73189	Canola	nucleus	90.28	97.44
Bra008218.1-P	Field mustard	nucleus	85.53	88.79
AT1G75710.1	Thale cress	nucleus	87.47	87.66
VIT_18s0001g14130.t01	Wine grape	vacuole	65.01	71.84
KRH17425	Soybean	nucleus	62.85	70.29
KRH05942	Soybean	nucleus	62.85	69.78
Bra014094.1-P	Field mustard	plastid	58.53	64.83
Bra015598.1-P	Field mustard	plastid	57.24	63.25
GSMUA_Achr11P...	Banana	nucleus	35.42	63.08
TraesCS2A01G004600.1	Wheat	nucleus	38.01	52.07
GSMUA_Achr8P19240_001	Banana	nucleus	43.63	47.87
GSMUA_Achr11P...	Banana	nucleus	45.79	46.19
Os04t0115500-00	Rice	nucleus	46.65	45.0
Zm00001d004497_P001	Maize	nucleus, plastid	44.06	44.44
TraesCSU01G012300.1	Wheat	nucleus, plastid	45.57	43.51
TraesCS2D01G004200.1	Wheat	nucleus, plastid	45.57	42.97
Zm00001d024883_P001	Maize	nucleus	45.79	41.41
EES10376	Sorghum	nucleus	46.65	39.85
Bra026366.1-P	Field mustard	nucleus	34.34	37.32
Bra020842.1-P	Field mustard	cytosol	20.09	36.05
Bra029455.1-P	Field mustard	cytosol	20.09	33.45
Bra022735.1-P	Field mustard	nucleus	34.13	33.4
Bra019849.1-P	Field mustard	cytosol, mitochondrion	25.7	33.24
Bra039993.1-P	Field mustard	extracellular, golgi, plastid	25.92	32.26
Bra027038.1-P	Field mustard	cytosol, plastid	18.36	32.2
Bra018369.1-P	Field mustard	extracellular, golgi, plastid	26.13	32.1

Protein Annotations

EnsemblPlants:Bra015824.1	EnsemblPlants:Bra015824.1-P	EnsemblPlantsGene:Bra015824	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF22	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0002541FDD	UniProt:M4DH47	MapMan:15.5.15

Description

AT1G75710 (E=2e-171) | zinc finger (C2H2 type) family protein

Coordinates

chrA07:+:20680181..20682468

Molecular Weight (calculated)

50010.4 Da

IEP (calculated)

9.525

GRAVY (calculated)

-0.481

Length

463 amino acids

Sequence
(BLAST)

001: MALLTILPEN AEPPKHTPPP SKRKKRENPT EQPHKPQKPH KPQKQKAAAP QKQPSSWDQI KNLLTCKQIE GLRVHDPSKN SQPAPSTTAN LSPSKLSSSC
101: SSICSFRDVA HGNTRVVHRA DNSPDVAKSA TPDSETRLLT RKPGQHGSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPMCKI ERILKVHNTQ RTIQRFEDCR DAVMARALQT ARKDARCAAD
301: GNELLRFHCT TLTCSLGSRG SSSLCSNLPS CGVCNVIRHG FQGKSGAGGV AAAAASSGGV RTTASSGRAD DLLRCGDDAR RVMLVCRVIA GRVKRVDLPA
401: DSTVEEKKSP VEDNSTVGAS TSGGVFDSVA VNAGVYSNLE ELVVYNPRAI LPCFVVIYKV LES

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.