Factsheet for GSMUA_Achr8P30300_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	55.44	79.26
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	65.28	76.13
GSMUA_Achr6P17990_001	Banana	nucleus	48.19	72.37
GSMUA_Achr9P00350_001	Banana	nucleus	48.19	65.26
PGSC0003DMT400074652	Potato	plastid	48.19	57.76
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	56.22	56.36
GSMUA_Achr11P...	Banana	nucleus	37.31	55.38
GSMUA_Achr7P19590_001	Banana	cytosol	12.18	54.65
KRH64726	Soybean	nucleus	54.92	49.77
KRH53192	Soybean	nucleus	54.4	49.65
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	42.49	48.66
Solyc11g013220.1.1	Tomato	nucleus	50.52	48.39
GSMUA_Achr6P19070_001	Banana	cytosol	15.8	46.21
VIT_18s0001g03670.t01	Wine grape	nucleus	56.99	44.99
GSMUA_Achr8P19240_001	Banana	nucleus	40.41	36.97
GSMUA_Achr6P24320_001	Banana	cytosol	31.61	36.2
GSMUA_Achr11P...	Banana	nucleus	41.97	35.29
GSMUA_AchrUn_...	Banana	cytosol	31.87	34.17
GSMUA_Achr1P08590_001	Banana	nucleus	36.01	33.33
GSMUA_Achr9P29950_001	Banana	cytosol	31.87	32.8
GSMUA_Achr9P24720_001	Banana	cytosol	30.31	32.41
GSMUA_Achr5P15290_001	Banana	nucleus	21.24	32.28
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	28.5	29.65
GSMUA_Achr2P10020_001	Banana	cytosol	19.95	28.73
GSMUA_Achr4P27010_001	Banana	plastid	21.24	28.67
GSMUA_Achr1P01700_001	Banana	nucleus	21.24	27.8
GSMUA_Achr7P07110_001	Banana	cytosol	19.69	27.54
GSMUA_Achr4P30380_001	Banana	cytosol	19.69	26.86
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	19.69	25.76
GSMUA_Achr6P19060_001	Banana	nucleus	11.66	19.91

Protein Annotations

EnsemblPlants:GSMUA_Achr8P30300_001	EnsemblPlants:GSMUA_Achr8T30300_001	EnsemblPlantsGene:GSMUA_Achr8G30300_001	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR31681	PANTHER:PTHR31681:SF21
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0002958144	UniProt:M0TUY2
MapMan:15.5.15	:	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_1.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr8G30300_001]

Coordinates

chr8:-:32428318..32429567

Molecular Weight (calculated)

42371.3 Da

IEP (calculated)

9.297

GRAVY (calculated)

-0.488

Length

386 amino acids

Sequence
(BLAST)

001: MAETGEARRK LERSNRSKKQ EQRRAKKSPA WRALRNLFSC KDQRDARGRK KGKKRDSTSE TSQEATTAAA VNPCNTSSRS LRSPCKDVSG DISTSFASYS
101: SASIVASATA SSSSSSSSSV GGSLTGMHLR RLSGCYECHV MVDPINGPSR DPSMRVSICS CPHCGEIFVR PESLELHQAV RHAVSELGPE DTSRNIIEII
201: FQSSWLKNQT PVCKIDRILK VHNTPKAITR FEDYRDSIKT KADNKLAKKH PRCVADGNEL LRFHCTTLAC SLGFNGSTNL CQSMERCDVC SIIRDGFKLD
301: EAGKVQTMAT SGRAHDMARV SSSDEEKRAM LVCRVIAGRV KKKSQDAVDE FDSVAGSAGT YSNIDELFVF SPKAILPCFV VIYTGF

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.