Factsheet for GSMUA_Achr6P19060_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P29950_001	Banana	cytosol	62.83	37.87
GSMUA_Achr6P24320_001	Banana	cytosol	51.33	34.42
GSMUA_Achr7P19590_001	Banana	cytosol	12.39	32.56
GSMUA_AchrUn_...	Banana	cytosol	50.88	31.94
GSMUA_Achr1P08590_001	Banana	nucleus	56.64	30.7
GSMUA_Achr9P24720_001	Banana	cytosol	48.23	30.19
TraesCS3D01G317900.1	Wheat	nucleus	55.75	26.2
TraesCS3B01G353600.1	Wheat	nucleus	55.31	25.72
HORVU3Hr1G077490.2	Barley	nucleus	54.42	25.36
TraesCS3A01G324600.1	Wheat	nucleus	55.31	24.65
Os01t0785900-01	Rice	mitochondrion, nucleus, peroxisome, plastid	52.65	24.54
Zm00001d012605_P001	Maize	nucleus	52.65	23.75
Zm00001d043243_P001	Maize	nucleus	52.65	23.56
EES03733	Sorghum	nucleus	53.54	23.14
Os06t0683000-01	Rice	cytosol, nucleus, plastid	43.81	21.29
Zm00001d014485_P001	Maize	nucleus, plastid	35.4	18.26
EER88828	Sorghum	cytosol	33.63	17.59
GSMUA_Achr6P17990_001	Banana	nucleus	15.93	14.01
GSMUA_Achr2P10020_001	Banana	cytosol	15.93	13.43
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	19.47	13.29
GSMUA_Achr9P00350_001	Banana	nucleus	16.37	12.98
GSMUA_Achr4P27010_001	Banana	plastid	16.37	12.94
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	21.68	12.73
GSMUA_Achr11P...	Banana	nucleus	14.6	12.69
GSMUA_Achr1P01700_001	Banana	nucleus	16.37	12.54
GSMUA_Achr11P...	Banana	cytosol	14.6	12.22
GSMUA_Achr4P30380_001	Banana	cytosol	15.04	12.01
GSMUA_Achr8P30300_001	Banana	nucleus	19.91	11.66
GSMUA_Achr8P19240_001	Banana	nucleus	21.68	11.61
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	15.04	11.53
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	18.14	11.05
GSMUA_Achr5P15290_001	Banana	nucleus	12.39	11.02
GSMUA_Achr7P07110_001	Banana	cytosol	12.83	10.51
GSMUA_Achr11P...	Banana	nucleus	20.8	10.24
GSMUA_Achr6P19070_001	Banana	cytosol	1.33	2.27

Protein Annotations

EnsemblPlants:GSMUA_Achr6P19060_001	EnsemblPlants:GSMUA_Achr6T19060_001	EnsemblPlantsGene:GSMUA_Achr6G19060_001	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF19	ScanProsite:PS00028	SEG:seg
UniParc:UPI00029530E6	UniProt:M0T8A4	MapMan:15.5.15	:	:	:

Description

Putative ZOS6-07 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G19060_001]

Coordinates

chr6:+:13275410..13277050

Molecular Weight (calculated)

25088.9 Da

IEP (calculated)

9.808

GRAVY (calculated)

-0.534

Length

226 amino acids

Sequence
(BLAST)

001: MPTLWITLKK SLHSKSGNSD VHELKGRSHL GTLLRRKRSR SCCSRSIADL GDVIHGARRQ MEKPNCSSPR SIGSSGVLNP IAHEVVLSDT RCELKIATGP
101: ERRSTTALRK VTYIFADRQG YSSLSDAVLG NAGADHASLK VWPSTGHSSP SLCHSCREQF GRWEDLEAHH LSKHAVSELL EGDSSRKIVE IICKASWSKF
201: ESSCGRLQRV LKVHNMQKTL TQSEEY

Best Arabidopsis Sequence Match ( AT4G27240.1 )
(BLAST)

001: MEASSTRSEK KKKKKTIQRE NTDTQKKKKL PSVWFSLKKS LPCKSDVSDV HIPRSKKELA PISTKRTTTS SGGGVGGRSG CSRSIANLKD VIHGNQRHLE
101: KPLCSSPRSI GSSEFLNPIT HDVIFSNSTC ELKITAAGAT EFVGNLRPGT PVNYSSSRRS QTSRKASSLD REGLGFHQSR RENDREAAIN GDNSSVSCHK
201: CGEKFSKLEA AEAHHLTKHA VTELMEGDSS RRIVEIICRT SWLKTENQGG RIDRILKVHN MQKTLARFEE YRDTVKIRAS KLQKKHPRCI ADGNELLRFH
301: GTTVACALGI NGSTSLCSSE KCCVCRIIRN GFSAKREMNN GIGVFTASTS ERAFESIVIG DGGGGDRKAL IVCRVIAGRV HRPVENVEEM GGLLSGFDSL
401: AGKVGLYTNV EELYLLNSRA LLPCFVLICK P

Arabidopsis Description

At4g27240 [Source:UniProtKB/TrEMBL;Acc:O81827]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.