Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
21433289
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P15900_001 | Banana | plastid | 55.74 | 58.29 |
| KRH19034 | Soybean | plastid | 50.27 | 53.49 |
| VIT_11s0052g00820.t01 | Wine grape | plastid | 48.09 | 52.07 |
| PGSC0003DMT400010489 | Potato | plastid | 46.99 | 50.89 |
| Solyc07g017950.2.1 | Tomato | plastid | 46.45 | 50.3 |
| Os12t0292400-01 | Rice | extracellular | 42.62 | 44.57 |
| Os12t0274700-01 | Rice | plastid | 42.08 | 44.0 |
| Os12t0291100-01 | Rice | plastid | 42.08 | 44.0 |
| Os12t0291400-01 | Rice | plastid | 42.08 | 44.0 |
| Os12t0291200-00 | Rice | plastid | 12.02 | 22.92 |
Protein Annotations
| KEGG:00630+4.1.1.39 | KEGG:00710+4.1.1.39 | MapMan:1.2.1.1.2 | Gene3D:3.30.190.10 | ProteinID:BAD38061.1 | ProteinID:BAD38596.1 |
| ProteinID:BAF07831.1 | ProteinID:BAS77018.1 | ProteinID:EEE56318.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004497 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009536 | GO:GO:0009853 | GO:GO:0009987 | GO:GO:0015977 | GO:GO:0015979 | GO:GO:0016491 |
| GO:GO:0016829 | GO:GO:0016984 | GO:GO:0055114 | InterPro:IPR036385 | EnsemblPlantsGene:Os02g0152400 | EnsemblPlants:Os02t0152400-01 |
| PFAM:PF00101 | PRINTS:PR00152 | PANTHER:PTHR31262 | PANTHER:PTHR31262:SF7 | UniProt:Q67IU5 | InterPro:RuBisCO_sc |
| InterPro:RuBisCO_sc_dom | InterPro:RuBisCO_ssu_sf | SMART:SM00961 | SUPFAM:SSF55239 | UniParc:UPI0000426469 | SEG:seg |
Description
RuBisCO small subunit 1, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 1Rubisco small subunit 1, Reguration of Rubisco catalytic activity (Os02t0152400-01)
Coordinates
chr2:+:2874951..2876254
Molecular Weight (calculated)
20595.6 Da
IEP (calculated)
8.865
GRAVY (calculated)
-0.298
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MFINTASFVA GAVVASPEQP AKLVRDQRRV VPGSCRARRG AASNGFRTYC MQTWNPFTNR RYEAMSYLPP LSAKSISKEI EFIMSKGWVP CLEFDKEGEI
101: HRSNSRMPGY YDGRYWTLWK LPMFGCSDAA AVLREVEECR REYPDAFIRL IAFDSSRQCQ CMSFVVHKPP SAAASPATVA GAE
101: HRSNSRMPGY YDGRYWTLWK LPMFGCSDAA AVLREVEECR REYPDAFIRL IAFDSSRQCQ CMSFVVHKPP SAAASPATVA GAE
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
Arabidopsis Description
RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.