Factsheet for VIT_11s0052g00820.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010489	Potato	plastid	73.37	73.37
Solyc07g017950.2.1	Tomato	plastid	71.01	71.01
KRH19034	Soybean	plastid	69.82	68.6
GSMUA_Achr7P15900_001	Banana	plastid	67.46	65.14
Os02t0152400-01	Rice	plastid	52.07	48.09
VIT_17s0000g03690.t01	Wine grape	plastid	45.56	42.78

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	EntrezGene:100256536	wikigene:100256536	Gene3D:3.30.190.10
ProteinID:CBI17844	ProteinID:CBI17844.3	UniProt:D7SQB3	EMBL:FN594964	GO:GO:0003674	GO:GO:0003824
GO:GO:0004497	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979
GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0055114	InterPro:IPR036385	EntrezGene:LOC100256536
wikigene:LOC100256536	PFAM:PF00101	PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF7	InterPro:RuBisCO_sc
InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239	UniParc:UPI00015CC2E3	ArrayExpress:VIT_11s0052g00820
EnsemblPlantsGene:VIT_11s0052g00820	EnsemblPlants:VIT_11s0052g00820.t01	unigene:Vvi.4931	RefSeq:XP_002270117	RefSeq:XP_002270117.1	:

Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:D7SQB3]

Coordinates

chr11:-:18374628..18375354

Molecular Weight (calculated)

19274.2 Da

IEP (calculated)

8.646

GRAVY (calculated)

-0.402

Length

169 amino acids

Sequence
(BLAST)

001: MAAGILSGPV TSFGYVGLKP HQPKLFPAKD SVAWSRKTVS NGSKTHCMKT WNPINNKKFE TLSYLPPLSD DSIAKEIDYM LKKGWIPCLE FDEVGYVFRK
101: NSQIPGYYDG RYWTLWKLPM FGCNDASQVL NEIHECKKTY PNAYIRCLAF DNEHQGQCMA FVIQKPTCS

Best Arabidopsis Sequence Match ( AT5G38410.1 )
(BLAST)

001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A

Arabidopsis Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.