Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0052g00820.t01 | Wine grape | plastid | 65.14 | 67.46 |
| KRH19034 | Soybean | plastid | 62.86 | 63.95 |
| PGSC0003DMT400010489 | Potato | plastid | 61.14 | 63.31 |
| Solyc07g017950.2.1 | Tomato | plastid | 58.29 | 60.35 |
| Os02t0152400-01 | Rice | plastid | 58.29 | 55.74 |
| GSMUA_Achr8P18400_001 | Banana | cytosol | 7.43 | 50.0 |
| GSMUA_Achr2P22730_001 | Banana | unclear | 43.43 | 48.1 |
| GSMUA_Achr10P... | Banana | plasma membrane | 42.86 | 47.47 |
| GSMUA_Achr6P09710_001 | Banana | plastid | 42.29 | 46.84 |
Protein Annotations
| KEGG:00630+4.1.1.39 | KEGG:00710+4.1.1.39 | MapMan:1.2.1.1.2 | Gene3D:3.30.190.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004497 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009536 | GO:GO:0009853 | GO:GO:0009987 | GO:GO:0015977 | GO:GO:0015979 |
| GO:GO:0016491 | GO:GO:0016829 | GO:GO:0016984 | GO:GO:0055114 | EnsemblPlantsGene:GSMUA_Achr7G15900_001 | EnsemblPlants:GSMUA_Achr7P15900_001 |
| EnsemblPlants:GSMUA_Achr7T15900_001 | InterPro:IPR036385 | UniProt:M0THX7 | PFAM:PF00101 | PRINTS:PR00152 | PANTHER:PTHR31262 |
| PANTHER:PTHR31262:SF7 | InterPro:RuBisCO_sc | InterPro:RuBisCO_sc_dom | InterPro:RuBisCO_ssu_sf | SMART:SM00961 | SUPFAM:SSF55239 |
| UniParc:UPI000295510B | : | : | : | : | : |
Description
Ribulose bisphosphate carboxylase small chain, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr7G15900_001]
Coordinates
chr7:+:12804761..12807347
Molecular Weight (calculated)
19800.7 Da
IEP (calculated)
8.255
GRAVY (calculated)
-0.263
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAAFLSAGA VAGYVGLRAD ASAKLFPEKD CSIGWRSRTV SNGFRTRCMK TWNPFNNNKY EALSYLPPLS KESIAKEVDY MIAKGYIPCL EFDEVGQVHR
101: TNSRIPGYYD GRYWTLWKLP MFGCTDPSLV LEEIEECKQV YPNAYIRLLS FDSQRQCQCM SFVIQKPTSA TVANA
101: TNSRIPGYYD GRYWTLWKLP MFGCTDPSLV LEEIEECKQV YPNAYIRLLS FDSQRQCQCM SFVIQKPTSA TVANA
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
Arabidopsis Description
RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.