Factsheet for PGSC0003DMT400010489

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g017950.2.1	Tomato	plastid	94.08	94.08
VIT_11s0052g00820.t01	Wine grape	plastid	73.37	73.37
KRH19034	Soybean	plastid	71.6	70.35
GSMUA_Achr7P15900_001	Banana	plastid	63.31	61.14
PGSC0003DMT400067905	Potato	plastid	49.7	52.83
PGSC0003DMT400032975	Potato	mitochondrion, plastid	51.48	48.33
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	51.48	48.07
PGSC0003DMT400062138	Potato	cytosol, plastid	50.89	47.51
Os02t0152400-01	Rice	plastid	50.89	46.99

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	EntrezGene:102580042	Gene3D:3.30.190.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004497	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987	GO:GO:0015977
GO:GO:0015979	GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0055114	InterPro:IPR036385
UniProt:M0ZY49	PFAM:PF00101	EnsemblPlantsGene:PGSC0003DMG400004097	PGSC:PGSC0003DMG400004097	EnsemblPlants:PGSC0003DMT400010489	PRINTS:PR00152
PANTHER:PTHR31262	PANTHER:PTHR31262:SF7	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_sf	SMART:SM00961
SUPFAM:SSF55239	UniParc:UPI0002949306	RefSeq:XP_006344531.1	:	:	:

Description

Ribulose bisphosphate carboxylase small chain [Source:PGSC_GENE;Acc:PGSC0003DMG400004097]

Coordinates

chr7:+:11010900..11013949

Molecular Weight (calculated)

19230.0 Da

IEP (calculated)

8.557

GRAVY (calculated)

-0.366

Length

169 amino acids

Sequence
(BLAST)

001: MSVSSFVAPI VGSTYVGLKS NSSNLFPAAK DTITWSRKTI SNGSKTYCMK TWNPIDNKKF ETLSYLPPQS EESIGKEVDY MIKKGWIPCL EFDQVGYVHR
101: ENSNMPGYYD GRYWTLWKLP MFGCNDSSQV LNEIQECKKA YPNAFIRCLA FDNVKQAQCM AFLIQKPAA

Best Arabidopsis Sequence Match ( AT1G67090.1 )
(BLAST)

001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG

Arabidopsis Description

RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.