Factsheet for Zm00001d028504_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003978_P001
Zm00001d013757_P010
Zm00001d016564_P001
Zm00001d017475_P002
Zm00001d018693_P001
Zm00001d028055_P001
Zm00001d030843_P001
Zm00001d033159_P001
Zm00001d048134_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68810.1	Zm00001d013757_P010	AT4G26630.1	25387881
AT1G68810.1	Zm00001d033159_P001	AT4G26630.1	25387881
AT3G25710.1	Zm00001d028055_P001	AT1G49850.1	21798944
AT3G25710.1	Zm00001d030843_P001	AT1G49850.1	21798944
AT3G25710.1	Zm00001d048134_P001	AT1G49850.1	21798944
AT3G25710.1	Zm00001d018693_P001	AT3G06430.1	21798944
AT3G25710.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT3G25710.1	Zm00001d003978_P001	AT3G48550.1	21798944
AT3G25710.1	Zm00001d016564_P001	AT3G48550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92884	Sorghum	nucleus	83.38	73.26
TraesCS4D01G217700.1	Wheat	nucleus	75.7	72.91
HORVU4Hr1G061760.1	Barley	nucleus	74.94	72.89
TraesCS4B01G217400.1	Wheat	nucleus	75.45	72.66
TraesCS4A01G087000.1	Wheat	nucleus	75.19	72.41
GSMUA_Achr6P30610_001	Banana	nucleus	35.29	72.25
GSMUA_Achr7P07280_001	Banana	nucleus	33.76	68.39
Zm00001d047878_P001	Maize	nucleus	71.1	65.11
Solyc04g006990.2.1	Tomato	nucleus	31.97	59.24
Bra025158.1-P	Field mustard	nucleus	31.46	55.16
Solyc05g009880.2.1	Tomato	nucleus	39.9	52.0
VIT_01s0011g02940.t01	Wine grape	nucleus	46.04	51.58
PGSC0003DMT400019294	Potato	nucleus	33.76	50.57
PGSC0003DMT400002155	Potato	nucleus	40.15	50.32
KRG92013	Soybean	nucleus	44.25	49.86
KRH34774	Soybean	nucleus	44.25	49.01
KRH75497	Soybean	nucleus	45.52	47.34
KRH70619	Soybean	nucleus	43.73	45.97
CDX95989	Canola	nucleus	39.13	43.34
Zm00001d032213_P001	Maize	nucleus	39.13	43.34
CDY33592	Canola	nucleus	39.13	43.22
Bra004338.1-P	Field mustard	nucleus	39.13	43.22
Zm00001d005740_P001	Maize	nucleus	38.11	42.82
AT3G25710.1	Thale cress	nucleus	37.34	42.44
Zm00001d050394_P001	Maize	nucleus	40.15	42.43
CDY13580	Canola	nucleus	36.32	42.39
CDX83546	Canola	nucleus	36.06	42.09
AT1G68810.1	Thale cress	nucleus	39.39	41.85
CDX99756	Canola	nucleus	35.55	41.74
CDY07364	Canola	nucleus	37.6	41.64
Bra004015.1-P	Field mustard	nucleus	37.6	41.64
Bra026510.1-P	Field mustard	nucleus	35.29	41.19
CDY04259	Canola	nucleus	37.08	40.96
Zm00001d034596_P001	Maize	nucleus	23.53	40.17
Zm00001d005919_P001	Maize	nucleus	19.44	35.51
Zm00001d020763_P001	Maize	nucleus	20.2	34.65
Zm00001d031818_P001	Maize	nucleus	19.69	32.22
Zm00001d039764_P001	Maize	nucleus	19.18	28.74
Zm00001d037528_P001	Maize	plastid	16.11	23.16

Protein Annotations

EntrezGene:103634024	MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1D6JWU3	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
ProteinID:ONL96208.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF77	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0001E24A5C	EnsemblPlantsGene:Zm00001d028504	EnsemblPlants:Zm00001d028504_P001	EnsemblPlants:Zm00001d028504_T001	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

bHLH-transcription factor 56Transcription factor AIG1

Coordinates

chr1:+:37284320..37286411

Molecular Weight (calculated)

41684.9 Da

IEP (calculated)

5.560

GRAVY (calculated)

-0.484

Length

391 amino acids

Sequence
(BLAST)

001: MGGHGDHHRR RRQEVEVLVH DDDEDLEHQS RACGGGATSG VVVEQGAGDG GGQAASSSLG SVSAATMAPP QIFCWPPQHH HNSSNDVGGG QQPPFFPPLP
101: PLPPTPPPFF ADLYARRALQ LAYDHHHPGG GPSTSSDPLG LYMAGGGSGM MMMPPPFASS LPFGDFGRMT AQEIMDAKAL AASRSHSEAE RRRRERINAH
201: LARLRSLLPN TTKTDKASLL AEVIQHVKEL KRQTSEITEE EACPLPTESD ELTVDAGSDE DGRLVVRASL CCDDRADLLP DLVRALKALR LRALKAEITT
301: LGGRVKNVLL ITADDDSSAH DGQREEEEEE APMSPQRTVA SIQEALRAVM ERTASAAAEE SGAAAASTGG AAGLKRQRMT SLSAILENRS I

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.