Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G217700.1 | Wheat | nucleus | 99.25 | 98.28 |
| TraesCS4A01G087000.1 | Wheat | nucleus | 98.51 | 97.54 |
| TraesCS4B01G217400.1 | Wheat | nucleus | 98.26 | 97.29 |
| Os03t0260600-01 | Rice | nucleus | 83.08 | 81.66 |
| Zm00001d028504_P001 | Maize | nucleus | 72.89 | 74.94 |
| GSMUA_Achr6P30610_001 | Banana | nucleus | 35.32 | 74.35 |
| GSMUA_Achr7P07280_001 | Banana | nucleus | 34.83 | 72.54 |
| OQU92884 | Sorghum | nucleus | 80.1 | 72.36 |
| Solyc04g006990.2.1 | Tomato | nucleus | 32.34 | 61.61 |
| Bra025158.1-P | Field mustard | nucleus | 31.59 | 56.95 |
| Solyc05g009880.2.1 | Tomato | nucleus | 41.04 | 55.0 |
| PGSC0003DMT400002155 | Potato | nucleus | 41.79 | 53.85 |
| VIT_01s0011g02940.t01 | Wine grape | nucleus | 46.52 | 53.58 |
| PGSC0003DMT400019294 | Potato | nucleus | 34.08 | 52.49 |
| KRH75497 | Soybean | nucleus | 48.01 | 51.33 |
| KRG92013 | Soybean | nucleus | 44.03 | 51.01 |
| KRH34774 | Soybean | nucleus | 44.78 | 50.99 |
| KRH70619 | Soybean | nucleus | 45.77 | 49.46 |
| CDY33592 | Canola | nucleus | 41.04 | 46.61 |
| CDX95989 | Canola | nucleus | 40.8 | 46.46 |
| Bra004338.1-P | Field mustard | nucleus | 40.8 | 46.33 |
| AT1G68810.1 | Thale cress | nucleus | 41.29 | 45.11 |
| CDY07364 | Canola | nucleus | 39.55 | 45.04 |
| Bra004015.1-P | Field mustard | nucleus | 39.55 | 45.04 |
| CDY13580 | Canola | nucleus | 37.06 | 44.48 |
| CDY04259 | Canola | nucleus | 39.05 | 44.35 |
| AT3G25710.1 | Thale cress | nucleus | 37.81 | 44.19 |
| CDX83546 | Canola | nucleus | 36.82 | 44.18 |
| CDX99756 | Canola | nucleus | 36.57 | 44.14 |
| Bra026510.1-P | Field mustard | nucleus | 36.57 | 43.88 |
| HORVU5Hr1G066530.2 | Barley | cytosol, nucleus | 36.82 | 40.33 |
| HORVU5Hr1G069580.1 | Barley | nucleus | 18.66 | 35.71 |
| HORVU1Hr1G024280.2 | Barley | plastid | 17.41 | 33.02 |
| HORVU3Hr1G027630.3 | Barley | nucleus | 19.9 | 31.75 |
| HORVU3Hr1G018680.1 | Barley | nucleus | 20.4 | 30.6 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G061760.1 | EnsemblPlantsGene:HORVU4Hr1G061760 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF77 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000B485420 | UniProt:A0A287PAK7 | MapMan:15.5.32 | : | : |
Description
No Description!
Coordinates
chrchr4H:-:518452840..518457076
Molecular Weight (calculated)
42925.7 Da
IEP (calculated)
5.689
GRAVY (calculated)
-0.430
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRHRREEV GVLLDEEEEE LEHHARACGG ATSGLVDQEL GGCQEGGGGM VFEASSSVGS VSATMGPPPI MCWPPPAPSL SPQEPLHGAI HHHHNFGIGG
101: QGPFFPLLPP LPPQPPPPPP FLADFYARRA LQFAYDHSGG ASSSSDPLGF GAGLYMGHHG SPVHGMMMPP PFGASPFGDF GRMTAQEIMD AKALAASKSH
201: SEAERRRRER INSHLARLRS LLPNTTKTDK ASLLAEVIQH VKELKRQTSE IREEACPLPT EADELTVDAS SDEDGRLLVR ASLCCDDRPD LLPDLIRALK
301: ALRLRALKAE ITTLGGRVKN VLVVTEDDSV ACDGDQQDED GGNMQAPMSP QHAVASIQEA LRAVMERTSS SSGAEDSGGS ASGGLKRQRT TSLSAILENR
401: SI
101: QGPFFPLLPP LPPQPPPPPP FLADFYARRA LQFAYDHSGG ASSSSDPLGF GAGLYMGHHG SPVHGMMMPP PFGASPFGDF GRMTAQEIMD AKALAASKSH
201: SEAERRRRER INSHLARLRS LLPNTTKTDK ASLLAEVIQH VKELKRQTSE IREEACPLPT EADELTVDAS SDEDGRLLVR ASLCCDDRPD LLPDLIRALK
301: ALRLRALKAE ITTLGGRVKN VLVVTEDDSV ACDGDQQDED GGNMQAPMSP QHAVASIQEA LRAVMERTSS SSGAEDSGGS ASGGLKRQRT TSLSAILENR
401: SI
001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
Arabidopsis Description
BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.