Factsheet for HORVU1Hr1G024280.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G129200.1	Wheat	plastid	88.21	88.21
TraesCS1D01G112000.1	Wheat	plastid	87.74	88.15
TraesCS1A01G110400.1	Wheat	plastid	87.26	87.26
EES19097	Sorghum	nucleus, plastid	49.53	45.65
HORVU3Hr1G018680.1	Barley	nucleus	54.72	43.28
Os05t0163900-01	Rice	nucleus	55.19	43.17
Zm00001d037528_P001	Maize	plastid	48.58	37.87
GSMUA_Achr5P29390_001	Banana	nucleus	40.57	36.91
HORVU5Hr1G069580.1	Barley	nucleus	30.66	30.95
Solyc03g095980.2.1	Tomato	nucleus	30.19	30.62
PGSC0003DMT400071293	Potato	nucleus	31.13	29.46
KRG97707	Soybean	nucleus	34.91	26.91
KRH14931	Soybean	nucleus, plastid	33.49	26.89
PGSC0003DMT400040448	Potato	nucleus	27.83	26.22
HORVU3Hr1G027630.3	Barley	nucleus	31.13	26.19
Solyc06g051260.2.1	Tomato	nucleus	27.36	25.78
KRH31167	Soybean	nucleus	33.96	25.71
AT2G40200.1	Thale cress	nucleus	30.19	25.2
Bra017024.1-P	Field mustard	nucleus, plastid	29.72	24.9
CDY07066	Canola	nucleus, plastid	29.25	24.51
CDX93211	Canola	nucleus, plastid	29.25	24.51
VIT_13s0067g01350.t01	Wine grape	nucleus	33.96	24.24
KRH73206	Soybean	golgi, nucleus	33.49	24.15
CDY07615	Canola	nucleus	25.94	23.61
Bra000177.1-P	Field mustard	nucleus	25.94	23.61
CDY24921	Canola	nucleus	26.42	23.33
HORVU5Hr1G066530.2	Barley	cytosol, nucleus	31.13	17.98
HORVU4Hr1G061760.1	Barley	nucleus	33.02	17.41

Protein Annotations

EnsemblPlants:HORVU1Hr1G024280.2	EnsemblPlantsGene:HORVU1Hr1G024280	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF130	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
SUPFAM:SSF55021	UniParc:UPI000296998C	UniProt:M0YGM3	MapMan:15.5.32	:	:

Description

No Description!

Coordinates

chrchr1H:+:109702721..109704367

Molecular Weight (calculated)

23084.9 Da

IEP (calculated)

8.502

GRAVY (calculated)

-0.220

Length

212 amino acids

Sequence
(BLAST)

001: MAACQGPASV PELSSSSGRS ATAVRSLKVH SESERRRRER INTHLATLRR MIPDANQMDK ATLLACVVNQ VKELKRKATE TTRLQATALI PPEANEMTVD
101: CYTAAGDNRT TCIRATVSCD DRPGLFVGLA EAFRGLGLRM LRTETASLGG RACHVFVLCK EGGDVGAGLR TLEWAVRQAM GEVVFPEMAC GDSSWSKRER
201: ILEGHCPVMY SV

Best Arabidopsis Sequence Match ( AT2G40200.1 )
(BLAST)

001: MENSYDSSKW SDSTTPYMVS WSLQSESSDS DWNRFNLGFS SSSFGGNFPA DDCVGGIEKA ESLSRSHRLA EKRRRDRINS HLTALRKLVP NSDKLDKAAL
101: LATVIEQVKE LKQKAAESPI FQDLPTEADE VTVQPETISD FESNTNTIIF KASFCCEDQP EAISEIIRVL TKLQLETIQA EIISVGGRMR INFILKDSNC
201: NETTNIAASA KALKQSLCSA LNRITSSSTT TSSVCRIRSK RQRWFLSSHY SHNE

Arabidopsis Description

BHLH51Transcription factor bHLH51 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.