Factsheet for Os05t0163900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G129200.1	Wheat	plastid	43.91	56.13
TraesCS1A01G110400.1	Wheat	plastid	43.54	55.66
TraesCS1D01G112000.1	Wheat	plastid	43.17	55.45
HORVU1Hr1G024280.2	Barley	plastid	43.17	55.19
EES19097	Sorghum	nucleus, plastid	42.07	49.57
Zm00001d037528_P001	Maize	plastid	47.23	47.06
GSMUA_Achr5P29390_001	Banana	nucleus	33.58	39.06
PGSC0003DMT400071293	Potato	nucleus	29.15	35.27
Os08t0477900-00	Rice	nucleus	26.57	32.29
Solyc03g095980.2.1	Tomato	nucleus	24.35	31.58
PGSC0003DMT400040448	Potato	nucleus	26.2	31.56
KRH14931	Soybean	nucleus, plastid	30.26	31.06
Bra017024.1-P	Field mustard	nucleus, plastid	28.41	30.43
CDX93211	Canola	nucleus, plastid	28.41	30.43
CDY07066	Canola	nucleus, plastid	28.41	30.43
Bra000177.1-P	Field mustard	nucleus	25.83	30.04
CDY07615	Canola	nucleus	25.83	30.04
CDY24921	Canola	nucleus	26.57	30.0
AT2G40200.1	Thale cress	nucleus	28.04	29.92
Os01t0218100-01	Rice	nucleus	29.15	29.59
KRG97707	Soybean	nucleus	29.89	29.45
Solyc06g051260.2.1	Tomato	nucleus	23.99	28.89
KRH31167	Soybean	nucleus	29.52	28.57
KRH73206	Soybean	golgi, nucleus	29.89	27.55
Os03t0811400-00	Rice	nucleus	26.57	26.87
VIT_13s0067g01350.t01	Wine grape	nucleus	28.04	25.59
Os09t0410700-00	Rice	nucleus	29.52	22.04
Os08t0432800-01	Rice	nucleus	28.04	22.03
Os03t0260600-01	Rice	nucleus	29.15	19.32

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:4337905	ProteinID:AAT07662.1	ProteinID:AAT69620.1	InterPro:ACT_dom
EMBL:AK110619	ProteinID:BAF16653.1	ProteinID:BAS92428.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR002912	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os05g0163900	EnsemblPlants:Os05t0163900-01	PFAM:PF00010
PFscan:PS50888	PFscan:PS51671	PANTHER:PTHR12565	PANTHER:PTHR12565:SF130	UniProt:Q75IR0	SMART:SM00353
SUPFAM:SSF47459	SUPFAM:SSF55021	UniParc:UPI000035E01A	RefSeq:XP_015638377.1	RefSeq:XP_015638378.1	RefSeq:XP_015638379.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

basic helix-loop-helix protein 036Helix-loop-helix DNA-binding domain containing protein. (Os05t0163900-01)

Coordinates

chr5:+:3756476..3759787

Molecular Weight (calculated)

29873.4 Da

IEP (calculated)

9.619

GRAVY (calculated)

-0.588

Length

271 amino acids

Sequence
(BLAST)

001: MAACQQQIWQ EGKQQQHLHH GGYDDLSSVY RGTVVLPRRQ GGLAPEPPPP RPSSSSGRSA AAQATAMTIH SEAERRRRER INAHLATLRR ILPDAKQMDK
101: ATLLASVVNQ VKHLKTRATE ATTPSTAATI PPEANEVTVQ CYAGGEHTAA ARTYVRATVS CDDRPGLLAD IAATFRRLRL RPLSADMSCL GGRTRHAFVL
201: CREEEEEEDA AAEARPLKEA VRQALAKVAL PETVYGGGGR SKRQRLMMES RYSTAVVHTH VDPQYCWYNS R

Best Arabidopsis Sequence Match ( AT2G40200.1 )
(BLAST)

001: MENSYDSSKW SDSTTPYMVS WSLQSESSDS DWNRFNLGFS SSSFGGNFPA DDCVGGIEKA ESLSRSHRLA EKRRRDRINS HLTALRKLVP NSDKLDKAAL
101: LATVIEQVKE LKQKAAESPI FQDLPTEADE VTVQPETISD FESNTNTIIF KASFCCEDQP EAISEIIRVL TKLQLETIQA EIISVGGRMR INFILKDSNC
201: NETTNIAASA KALKQSLCSA LNRITSSSTT TSSVCRIRSK RQRWFLSSHY SHNE

Arabidopsis Description

BHLH51Transcription factor bHLH51 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.