Factsheet for Os08t0432800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0656300-01
Os03t0206900-01
Os03t0309800-02
Os03t0596900-01
Os04t0386300-01
Os06t0679100-00
Os12t0580700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68810.1	Os03t0596900-01	AT4G26630.1	25387881
AT3G25710.1	Os03t0206900-01	AT1G49850.1	21798944
AT3G25710.1	Os12t0580700-01	AT1G49850.1	21798944
AT3G25710.1	Os03t0309800-02	AT3G06430.1	21798944
AT3G25710.1	Os02t0656300-01	AT3G48150.1	21798944
AT3G25710.1	Os06t0679100-00	AT3G48150.1	21798944
AT3G25710.1	Os04t0386300-01	AT3G48550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P30610_001	Banana	nucleus	34.2	61.78
GSMUA_Achr7P07280_001	Banana	nucleus	33.62	60.1
Zm00001d032213_P001	Maize	nucleus	61.16	59.77
Zm00001d050394_P001	Maize	nucleus	64.06	59.73
Os09t0410700-00	Rice	nucleus	60.87	57.85
Solyc04g006990.2.1	Tomato	nucleus	33.91	55.45
EES15038	Sorghum	nucleus	62.32	54.85
Bra025158.1-P	Field mustard	nucleus	34.78	53.81
PGSC0003DMT400019294	Potato	nucleus	35.65	47.13
Solyc05g009880.2.1	Tomato	nucleus	38.55	44.33
VIT_01s0011g02940.t01	Wine grape	nucleus	44.06	43.55
PGSC0003DMT400002155	Potato	nucleus	38.26	42.31
KRH70619	Soybean	nucleus	42.61	39.52
KRG92013	Soybean	nucleus	39.71	39.48
KRH34774	Soybean	nucleus	40.0	39.09
CDX99756	Canola	nucleus	37.68	39.04
CDY13580	Canola	nucleus	37.68	38.81
Bra026510.1-P	Field mustard	nucleus	37.68	38.81
CDX83546	Canola	nucleus	37.39	38.51
KRH75497	Soybean	nucleus	41.74	38.3
Bra004015.1-P	Field mustard	nucleus	38.84	37.96
CDY07364	Canola	nucleus	38.84	37.96
AT3G25710.1	Thale cress	nucleus	37.39	37.5
CDX95989	Canola	nucleus	38.26	37.39
Bra004338.1-P	Field mustard	nucleus	38.26	37.29
CDY33592	Canola	nucleus	38.26	37.29
Os03t0260600-01	Rice	nucleus	44.06	37.16
CDY04259	Canola	nucleus	37.97	37.01
AT1G68810.1	Thale cress	nucleus	39.42	36.96
Os03t0811400-00	Rice	nucleus	27.54	35.45
Os01t0218100-01	Rice	nucleus	26.38	34.08
Os08t0477900-00	Rice	nucleus	22.03	34.08
Os05t0163900-01	Rice	nucleus	22.03	28.04

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:4345648	EMBL:AK109616	ProteinID:BAD09830.1	ProteinID:BAF23784.1
ProteinID:BAT05568.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os08g0432800	EnsemblPlants:Os08t0432800-01	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF98	UniProt:Q6ZA99	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000023AF33
RefSeq:XP_015648851.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

basic helix-loop-helix protein 038Similar to BHLH transcription activator Ivory seed. (Os08t0432800-01)

Coordinates

chr8:-:20974277..20977254

Molecular Weight (calculated)

36049.6 Da

IEP (calculated)

6.276

GRAVY (calculated)

-0.324

Length

345 amino acids

Sequence
(BLAST)

001: MWEAVGGGDG TALLPWPGSA AAAPLYMPPA AAAAAPFAAG EQLPVEQPFY FDGGGGVAGH NHHPHHHQYG MEAPPPMTMM QMGGGGSSSS RMVVSGLLGT
101: LQAELGRMTA KEIMDAKALA ASRSHSEAER RRRQRINGHL ARLRSLLPNT TKTDKASLLA EVIEHVKELK RQTSAMMEDG AAGGEAAAAP VVLLPTEDDE
201: LEVDAAADEG GRLVARASLC CEDRADLIPG IARALAALRL RARRAEIATL GGRVRSVLLI AAVEEEDPDE AGNDDDGEHG YGVAASHRRH ELVASIHEAL
301: RGVMNRKAAS SDTSSSGAGG GGGSIKRQRM ISAHDQQGSF NSSGW

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.