Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G217700.1 | Wheat | nucleus | 82.89 | 83.5 |
| HORVU4Hr1G061760.1 | Barley | nucleus | 81.66 | 83.08 |
| TraesCS4B01G217400.1 | Wheat | nucleus | 82.15 | 82.76 |
| TraesCS4A01G087000.1 | Wheat | nucleus | 82.15 | 82.76 |
| OQU92884 | Sorghum | nucleus | 83.37 | 76.63 |
| GSMUA_Achr6P30610_001 | Banana | nucleus | 34.72 | 74.35 |
| GSMUA_Achr7P07280_001 | Banana | nucleus | 33.74 | 71.5 |
| Zm00001d047878_P001 | Maize | nucleus | 69.44 | 66.51 |
| Solyc04g006990.2.1 | Tomato | nucleus | 31.3 | 60.66 |
| Bra025158.1-P | Field mustard | nucleus | 31.3 | 57.4 |
| Solyc05g009880.2.1 | Tomato | nucleus | 39.36 | 53.67 |
| VIT_01s0011g02940.t01 | Wine grape | nucleus | 45.48 | 53.3 |
| PGSC0003DMT400002155 | Potato | nucleus | 39.85 | 52.24 |
| KRH75497 | Soybean | nucleus | 47.19 | 51.33 |
| PGSC0003DMT400019294 | Potato | nucleus | 32.52 | 50.96 |
| KRG92013 | Soybean | nucleus | 42.79 | 50.43 |
| KRH34774 | Soybean | nucleus | 43.52 | 50.42 |
| KRH70619 | Soybean | nucleus | 44.99 | 49.46 |
| CDX95989 | Canola | nucleus | 40.1 | 46.46 |
| CDY33592 | Canola | nucleus | 40.1 | 46.33 |
| Bra004338.1-P | Field mustard | nucleus | 40.1 | 46.33 |
| AT1G68810.1 | Thale cress | nucleus | 40.83 | 45.38 |
| CDY07364 | Canola | nucleus | 38.88 | 45.04 |
| Bra004015.1-P | Field mustard | nucleus | 38.88 | 45.04 |
| CDY04259 | Canola | nucleus | 38.39 | 44.35 |
| Os08t0432800-01 | Rice | nucleus | 37.16 | 44.06 |
| CDY13580 | Canola | nucleus | 35.94 | 43.88 |
| AT3G25710.1 | Thale cress | nucleus | 36.67 | 43.6 |
| CDX83546 | Canola | nucleus | 35.7 | 43.58 |
| CDX99756 | Canola | nucleus | 34.96 | 42.94 |
| Bra026510.1-P | Field mustard | nucleus | 34.96 | 42.69 |
| Os09t0410700-00 | Rice | nucleus | 34.72 | 39.12 |
| Os03t0811400-00 | Rice | nucleus | 24.45 | 37.31 |
| Os08t0477900-00 | Rice | nucleus | 19.07 | 34.98 |
| Os01t0218100-01 | Rice | nucleus | 22.74 | 34.83 |
| Os05t0163900-01 | Rice | nucleus | 19.32 | 29.15 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:4332318 | ProteinID:ABF95080.1 | ProteinID:BAF11533.1 | ProteinID:BAS83355.1 |
| ncoils:Coil | ProteinID:EAZ26331.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os03g0260600 |
| EnsemblPlants:Os03t0260600-01 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF77 | UniProt:Q10NS6 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0000DB4CF0 | RefSeq:XP_015629966.1 | InterPro:bHLH_dom | SEG:seg |
Description
basic helix-loop-helix protein 040Helix-loop-helix DNA-binding domain containing protein. (Os03t0260600-01)
Coordinates
chr3:+:8458131..8461066
Molecular Weight (calculated)
43115.8 Da
IEP (calculated)
5.617
GRAVY (calculated)
-0.384
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAHGDHRHH HHHQEAGVLV DEEEEEVIEQ ACGGPTSGVV EQEVGGDGGG VCQDAAGMVF EATSSVGSVS ATMGPPPIMC WPPPAQPVHG AIHHHHNLGG
101: GGGQQSPFFP LLPPLPPQPP PPPPFFADFY ARRALQYAYD HSGGASSSSD PLGLGGLYMG HHGSHVAGMM MPPPFAPSPF GDLGRMTAQE IMDAKALAAS
201: KSHSEAERRR RERINAHLAR LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSEITEEACP LPTESDELTV DASSDEDGRL VVRASLCCDD RTDLLPDLIR
301: ALKALRLRAL KAEITTLGGR VKNVLVVTGD DSAAAAACAG TDGDGEQQEE AMQAPMSPQH TVASIQDALR AVMERTASAT EESGGSGAGG GLKRQRTTSL
401: SAILENRSI
101: GGGQQSPFFP LLPPLPPQPP PPPPFFADFY ARRALQYAYD HSGGASSSSD PLGLGGLYMG HHGSHVAGMM MPPPFAPSPF GDLGRMTAQE IMDAKALAAS
201: KSHSEAERRR RERINAHLAR LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSEITEEACP LPTESDELTV DASSDEDGRL VVRASLCCDD RTDLLPDLIR
301: ALKALRLRAL KAEITTLGGR VKNVLVVTGD DSAAAAACAG TDGDGEQQEE AMQAPMSPQH TVASIQDALR AVMERTASAT EESGGSGAGG GLKRQRTTSL
401: SAILENRSI
001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR
Arabidopsis Description
BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.