Factsheet for VIT_01s0011g02940.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0091g00480.t01
VIT_05s0020g00690.t01
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_17s0000g01360.t01
VIT_19s0015g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68810.1	VIT_19s0015g00430.t01	AT4G26630.1	25387881
AT3G25710.1	VIT_03s0091g00480.t01	AT1G49850.1	21798944
AT3G25710.1	VIT_05s0020g00690.t01	AT3G06430.1	21798944
AT3G25710.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT3G25710.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT3G25710.1	VIT_17s0000g01360.t01	AT3G48550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21280_001	Banana	nucleus	42.41	74.37
GSMUA_Achr6P30610_001	Banana	nucleus	40.4	73.82
KRG92013	Soybean	nucleus	71.35	71.76
Solyc05g009880.2.1	Tomato	nucleus	61.6	71.67
GSMUA_Achr11P...	Banana	nucleus	40.69	71.36
KRH75497	Soybean	nucleus	76.79	71.28
KRH34774	Soybean	nucleus	71.92	71.1
KRH70619	Soybean	nucleus	74.79	70.16
Solyc04g006990.2.1	Tomato	nucleus	42.12	69.67
PGSC0003DMT400002155	Potato	nucleus	61.32	68.59
GSMUA_Achr7P07280_001	Banana	nucleus	37.54	67.88
PGSC0003DMT400019294	Potato	nucleus	46.13	61.69
Bra025158.1-P	Field mustard	nucleus	38.97	60.99
CDX95989	Canola	nucleus	60.74	60.06
Bra004338.1-P	Field mustard	nucleus	60.74	59.89
CDY33592	Canola	nucleus	60.74	59.89
AT1G68810.1	Thale cress	nucleus	61.89	58.7
CDY07364	Canola	nucleus	58.17	57.51
Bra004015.1-P	Field mustard	nucleus	58.17	57.51
CDY04259	Canola	nucleus	57.88	57.06
CDX99756	Canola	nucleus	50.43	52.85
CDY13580	Canola	nucleus	50.43	52.54
CDX83546	Canola	nucleus	50.14	52.24
AT3G25710.1	Thale cress	nucleus	51.29	52.03
Bra026510.1-P	Field mustard	nucleus	49.86	51.94
HORVU4Hr1G061760.1	Barley	nucleus	53.58	46.52
TraesCS4A01G087000.1	Wheat	nucleus	53.87	46.31
TraesCS4D01G217700.1	Wheat	nucleus	53.87	46.31
TraesCS4B01G217400.1	Wheat	nucleus	53.58	46.06
Zm00001d028504_P001	Maize	nucleus	51.58	46.04
VIT_08s0040g01240.t01	Wine grape	nucleus	31.23	45.61
Os03t0260600-01	Rice	nucleus	53.3	45.48
TraesCS5A01G230500.1	Wheat	nucleus	42.98	44.78
TraesCS5D01G237300.1	Wheat	nucleus	42.98	44.51
TraesCS5B01G229000.1	Wheat	nucleus	42.41	44.31
Os08t0432800-01	Rice	nucleus	43.55	44.06
Zm00001d032213_P001	Maize	nucleus	43.55	43.06
Zm00001d050394_P001	Maize	nucleus	44.41	41.89
HORVU5Hr1G066530.2	Barley	cytosol, nucleus	43.55	41.42
EES15038	Sorghum	nucleus	46.42	41.33
OQU92884	Sorghum	nucleus	52.44	41.12
Zm00001d005740_P001	Maize	nucleus	40.69	40.8
EER98886	Sorghum	nucleus	40.97	40.51
Os09t0410700-00	Rice	nucleus	42.12	40.5
Zm00001d047878_P001	Maize	nucleus	47.85	39.11
VIT_14s0068g01580.t01	Wine grape	nucleus	28.37	37.64
VIT_18s0001g07410.t01	Wine grape	nucleus	22.92	36.2
VIT_12s0028g02350.t01	Wine grape	nucleus	26.65	35.91
VIT_10s0003g01160.t01	Wine grape	nucleus	15.19	33.33
VIT_13s0067g01350.t01	Wine grape	nucleus	22.64	26.6

Protein Annotations

EntrezGene:100250878	wikigene:100250878	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CCB50946	ProteinID:CCB50946.1
UniProt:F6HF16	EMBL:FN595752	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100250878	wikigene:LOC100250878	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF77	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00015C7B79
ArrayExpress:VIT_01s0011g02940	EnsemblPlantsGene:VIT_01s0011g02940	EnsemblPlants:VIT_01s0011g02940.t01	RefSeq:XP_002278697	RefSeq:XP_002278697.1	RefSeq:XP_010647981.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:2606154..2608392

Molecular Weight (calculated)

38525.5 Da

IEP (calculated)

6.589

GRAVY (calculated)

-0.601

Length

349 amino acids

Sequence
(BLAST)

001: MCGKKEEDQG ECSQTIHNIQ GYQEQLLLQQ HHQMQQQNND AYGGGGGRSG LIFPEVSPIL QPWSFPPVHA FNPAHFAANP VRDHDPFLVP PPPSAYGSVF
101: NRRAPALQFA YEGPSSEHLR IISDTLGPVV QPGSSPFGLQ AELGKMTAQE IMDAKALAAS KSHSEAERRR RERINNHLAK LRSLLPSTTK TDKASLLAEV
201: IQHVKELKRQ TSLIAESSPV PTEMDELTVD TSDEDGKFVI KASLCCEDRT DLLPDLIKTL KALRLRTLKA EITTLGGRVK NVLFITGEED SSSSGENQQQ
301: QQQQQQQYSI SSIQEALKAV MEKTGGDESS SGSVKRQRTN INIIEHRSL

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.