CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009778_P001	Maize	nucleus	76.89	83.56
GSMUA_Achr7P21110_001	Banana	nucleus	60.5	75.0
GSMUA_Achr7P21190_001	Banana	nucleus	60.5	72.73
VIT_05s0020g02700.t01	Wine grape	nucleus	57.14	71.58
TraesCS2A01G120700.1	Wheat	nucleus	62.6	68.98
TraesCS2D01G122800.1	Wheat	nucleus	62.18	68.84
Solyc01g080050.2.1	Tomato	nucleus	55.46	67.69
KRH20902	Soybean	cytosol	52.52	65.44
KRH11385	Soybean	cytosol	52.1	64.92
TraesCS2B01G141600.1	Wheat	plastid	62.6	62.6
Os05t0597000-00	Rice	nucleus	59.66	62.56
HORVU2Hr1G020990.1	Barley	nucleus	61.76	61.76
AT3G06120.1	Thale cress	nucleus	49.16	57.92
Bra040234.1-P	Field mustard	nucleus	48.32	57.21
CDY18843	Canola	nucleus	48.32	57.21
Bra001183.1-P	Field mustard	nucleus	49.58	57.0
CDY58338	Canola	nucleus	49.58	57.0
CDY08066	Canola	nucleus	49.58	57.0
CDY05233	Canola	nucleus	48.32	56.37
Bra020775.1-P	Field mustard	nucleus	47.48	56.22
CDY24717	Canola	nucleus	47.48	56.22
EER88428	Sorghum	nucleus	41.6	26.05
EES06610	Sorghum	nucleus	43.28	25.88
EER96894	Sorghum	nucleus	35.71	25.15
KXG27015	Sorghum	cytosol	34.45	23.91
OQU91887	Sorghum	nucleus	32.35	23.77
OQU93358	Sorghum	nucleus	30.67	22.6
KXG30709	Sorghum	nucleus	33.19	22.57
EES07423	Sorghum	nucleus	32.35	22.06
EER95359	Sorghum	nucleus	32.77	21.85
KXG27016	Sorghum	cytosol, nucleus, plastid	31.09	21.39
KXG22636	Sorghum	nucleus	37.82	19.69

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1B6PAN7	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009913	GO:GO:0009987	GO:GO:0010374	GO:GO:0030154	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KXG22733	ProteinID:KXG22733	ProteinID:KXG22733.1
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR45509	SMART:SM00353	EnsemblPlantsGene:SORBI_3009G260200	SUPFAM:SSF47459
UniParc:UPI00081ABB0A	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:59340229..59341362

Molecular Weight (calculated)

25952.3 Da

IEP (calculated)

7.925

GRAVY (calculated)

-0.103

Length

238 amino acids

Sequence
(BLAST)

001: MSHIAVERNR RRQMNEHLKV LRSLTPGLYI KRGDQASIIG GAIEFIKELQ QVLESLEARK KRRSGGSFIS RTSSSPSPTP SPRSHFLSSG SSSAASSSTT
101: TMATPSPPVA TTTMIKELAA CCNSAVADVE AKISGSNVLL RTLSRRIPGQ AVRMIAVLEG LHLEVLHLNI STMEDTVLHS FVLKIGLECQ LSVEDLAYEV
201: QQTFVVVCCR DGDLELPEPA DQSQENHRLM MYSSAMAI

Best Arabidopsis Sequence Match ( AT3G06120.1 )
(BLAST)

001: MSHIAVERNR RRQMNEHLKS LRSLTPCFYI KRGDQASIIG GVIEFIKELQ QLVQVLESKK RRKTLNRPSF PYDHQTIEPS SLGAATTRVP FSRIENVMTT
101: STFKEVGACC NSPHANVEAK ISGSNVVLRV VSRRIVGQLV KIISVLEKLS FQVLHLNISS MEETVLYFFV VKIGLECHLS LEELTLEVQK SFVSDEVIVS
201: TN

Arabidopsis Description

MUTETranscription factor MUTE [Source:UniProtKB/Swiss-Prot;Acc:Q9M8K6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.