CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026046_P001	Maize	nucleus	50.87	52.38
KXG27015	Sorghum	cytosol	51.16	51.6
Zm00001d002492_P001	Maize	mitochondrion	24.28	47.73
HORVU2Hr1G106030.2	Barley	cytosol, mitochondrion, nucleus	13.58	45.63
GSMUA_Achr11P...	Banana	mitochondrion	24.86	45.5
TraesCS2B01G469800.1	Wheat	nucleus	37.57	39.76
TraesCS2B01G469700.1	Wheat	nucleus	37.57	39.76
TraesCS2D01G448000.1	Wheat	nucleus	36.99	38.67
TraesCS2A01G448800.1	Wheat	nucleus	36.71	38.37
EES07423	Sorghum	nucleus	37.28	36.96
GSMUA_Achr11P...	Banana	nucleus	31.21	36.0
KRH45428	Soybean	nucleus	30.92	35.31
VIT_02s0012g01450.t01	Wine grape	nucleus	31.79	34.92
KXG30709	Sorghum	nucleus	35.26	34.86
EER96894	Sorghum	nucleus	33.24	34.02
KRH75598	Soybean	nucleus	29.77	33.99
Solyc08g076820.2.1	Tomato	nucleus	31.21	32.93
PGSC0003DMT400045210	Potato	nucleus	31.21	32.73
EER95359	Sorghum	nucleus	33.24	32.21
OQU91887	Sorghum	nucleus	30.06	32.1
KXG22733	Sorghum	nucleus	21.39	31.09
CDY03201	Canola	cytosol	15.61	29.83
Bra025007.1-P	Field mustard	nucleus	23.41	29.56
CDY63053	Canola	nucleus	27.46	29.32
CDX77682	Canola	nucleus	27.46	29.32
AT5G46690.1	Thale cress	nucleus	27.46	29.05
Bra017533.1-P	Field mustard	nucleus	23.99	28.72
CDY35175	Canola	nucleus	24.28	28.57
OQU93358	Sorghum	nucleus	26.3	28.17
KXG22636	Sorghum	nucleus	25.72	19.47
EER88428	Sorghum	nucleus	19.65	17.89
EES06610	Sorghum	nucleus	19.08	16.58

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1B6PMX5	InterPro:ACT_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR002912	InterPro:IPR011598
InterPro:IPR036638	EnsemblPlants:KXG27016	ProteinID:KXG27016	ProteinID:KXG27016.1	PFAM:PF00010	PFscan:PS50888
PFscan:PS51671	PANTHER:PTHR11969	PANTHER:PTHR11969:SF31	SMART:SM00353	EnsemblPlantsGene:SORBI_3006G197500	SUPFAM:SSF47459
UniParc:UPI00081ACDA5	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:55004525..55008252

Molecular Weight (calculated)

36979.5 Da

IEP (calculated)

6.954

GRAVY (calculated)

-0.303

Length

346 amino acids

Sequence
(BLAST)

001: MTLEAQCTTT SDVLVYDTAA AAACAGSAGA ESSLFGNAAP AEAPAASQAN GESSVQQVRG NRRGRQRTTK NDSDAENQRL MNHMAFERNR RRQMSEALAA
101: LRSFLPDSYV HQSDKAAVVS GAINCVKELE LHLQALEAQK LALNRQQLLL QQQQRRSDTA AERNAAKLSP GHDNPASAGN NSGDAAARGE VPAPAPQPPP
201: FAWFFRYPQY AWRQAKQARK YAAAVVEGEE ASRRAAAVAD VEVGMVDHGH ASLRVMAPRR PGQLLRMVAV MQELGLHVLH LTVATAPDAT VLYTFNLLAE
301: EGCSLATEEE IAAAVHHVLC IIDAEVTAHR LLAAGAAGHP GLERSS

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.