Factsheet for GSMUA_Achr11P00350_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	47.33	75.13
HORVU2Hr1G106030.2	Barley	cytosol, mitochondrion, nucleus	24.33	70.87
GSMUA_Achr10P...	Banana	mitochondrion	37.0	56.06
GSMUA_Achr3P06660_001	Banana	mitochondrion, nucleus	33.67	54.3
GSMUA_Achr9P15000_001	Banana	mitochondrion	35.33	53.27
TraesCS2A01G448800.1	Wheat	nucleus	53.0	48.04
TraesCS2B01G469800.1	Wheat	nucleus	51.33	47.09
TraesCS2B01G469700.1	Wheat	nucleus	51.33	47.09
KRH75598	Soybean	nucleus	47.33	46.86
TraesCS2D01G448000.1	Wheat	nucleus	51.67	46.83
VIT_02s0012g01450.t01	Wine grape	nucleus	49.0	46.67
KRH45428	Soybean	nucleus	47.0	46.53
TraesCS6B01G291200.1	Wheat	nucleus	52.0	46.43
GSMUA_Achr2P22310_001	Banana	nucleus	37.33	46.28
GSMUA_Achr5P17900_001	Banana	nucleus	43.33	46.1
TraesCS6A01G264200.1	Wheat	nucleus	51.33	45.83
TraesCS6D01G250700.1	Wheat	nucleus	52.0	44.96
HORVU6Hr1G067000.2	Barley	nucleus	52.0	44.96
GSMUA_Achr10P...	Banana	nucleus	46.0	44.66
Os02t0691500-01	Rice	nucleus	55.0	44.24
GSMUA_Achr8P28400_001	Banana	nucleus	29.0	43.72
Solyc08g076820.2.1	Tomato	nucleus	47.33	43.29
GSMUA_Achr5P05450_001	Banana	nucleus	41.33	43.21
PGSC0003DMT400045210	Potato	nucleus	47.0	42.73
GSMUA_Achr6P10290_001	Banana	nucleus	41.33	42.61
EES07423	Sorghum	nucleus	47.33	40.69
Bra025007.1-P	Field mustard	nucleus	36.33	39.78
Zm00001d051509_P001	Maize	nucleus	44.0	39.76
GSMUA_Achr7P21110_001	Banana	nucleus	25.33	39.58
Zm00001d026046_P001	Maize	nucleus	44.33	39.58
CDX77682	Canola	nucleus	42.67	39.51
AT5G46690.1	Thale cress	nucleus	43.0	39.45
CDY63053	Canola	nucleus	42.0	38.89
GSMUA_Achr8P17650_001	Banana	nucleus	38.0	38.51
GSMUA_Achr7P21190_001	Banana	nucleus	25.33	38.38
GSMUA_Achr6P02150_001	Banana	nucleus	44.0	38.26
CDY03201	Canola	cytosol	23.0	38.12
Zm00001d017677_P001	Maize	nucleus	46.33	37.98
Bra017533.1-P	Field mustard	nucleus	36.33	37.72
GSMUA_Achr7P12790_001	Banana	nucleus	41.0	37.61
KXG27015	Sorghum	cytosol	42.33	37.03
CDY35175	Canola	nucleus	36.0	36.73
Zm00001d002492_P001	Maize	mitochondrion	20.67	35.23
GSMUA_Achr2P06030_001	Banana	nucleus	36.33	34.17
GSMUA_Achr11P...	Banana	nucleus	32.0	33.68
GSMUA_Achr5P20300_001	Banana	nucleus	32.33	33.22
KXG27016	Sorghum	cytosol, nucleus, plastid	36.0	31.21
GSMUA_Achr11P...	Banana	nucleus	31.67	28.79
GSMUA_Achr10P...	Banana	nucleus	25.0	28.74
GSMUA_Achr5P06780_001	Banana	cytosol	26.33	27.92
GSMUA_Achr8P19870_001	Banana	cytosol, golgi, nucleus	26.67	25.72
GSMUA_Achr8P12330_001	Banana	golgi, vacuole	30.33	24.86

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	InterPro:ACT_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr11G00350_001	EnsemblPlants:GSMUA_Achr11P00350_001	EnsemblPlants:GSMUA_Achr11T00350_001	InterPro:HLH_DNA-bd_sf
InterPro:IPR002912	InterPro:IPR011598	InterPro:IPR036638	UniProt:M0RN66	PFAM:PF00010	PFscan:PS50888
PFscan:PS51671	PANTHER:PTHR11969	PANTHER:PTHR11969:SF31	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000296F188
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_191.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr11G00350_001]

Coordinates

chr11:+:210315..212718

Molecular Weight (calculated)

32193.2 Da

IEP (calculated)

6.440

GRAVY (calculated)

-0.254

Length

300 amino acids

Sequence
(BLAST)

001: MTLEALASAE LSSFLIYDTI TASPLLHHAE PSSSSSFLFR SAGGEDAVGS LGIGPSRSGL VGGIPAAKEE PRPEAAAVGQ GKRKRRRTRT CKNMEEAENQ
101: RMTHIAVERN RRRQMNEHLA VLRSLMPESY IQRGDQASVV GGAIDFVKEL EQLLQSLEAQ KRTLQQQAGK QERSSYIGEA GSSSSSSGSS GSNSDGQDHP
201: PSENQLPALA DIEVTLIETH ANVRILSPKR PGQLFKMVAG LHNLSLTILH LNVTALDSMV LYSLSVKVEE GCSLTAVDDI AAAIHHLLSL IEAEVTALAH

Best Arabidopsis Sequence Match ( AT5G46690.1 )
(BLAST)

001: MTLEALSSNG LLNFLLSETL SPTPFKSLVD LEPLPENDVI ISKNTISEIS NQEPPPQRQP PATNRGKKRR RRKPRVCKNE EEAENQRMTH IAVERNRRRQ
101: MNQHLSVLRS LMPQPFAHKG DQASIVGGAI DFIKELEHKL LSLEAQKHHN AKLNQSVTSS TSQDSNGEQE NPHQPSSLSL SQFFLHSYDP SQENRNGSTS
201: SVKTPMEDLE VTLIETHANI RILSRRRGFR WSTLATTKPP QLSKLVASLQ SLSLSILHLS VTTLDNYAIY SISAKVEESC QLSSVDDIAG AVHHMLSIIE
301: EEPFCCSSMS ELPFDFSLNH SNVTHSL

Arabidopsis Description

BHLH71Transcription factor bHLH71 [Source:UniProtKB/Swiss-Prot;Acc:Q56XR0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.