Factsheet for Os08t0483900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031260_P001	Maize	nucleus	43.25	72.69
TraesCS6A01G335500.1	Wheat	nucleus	62.26	64.39
TraesCS6B01G366200.1	Wheat	nucleus	61.16	64.16
TraesCS6D01G315200.1	Wheat	nucleus	60.33	64.04
Os09t0468700-00	Rice	nucleus	56.75	58.69
HORVU6Hr1G081120.4	Barley	nucleus	55.92	58.67
Os02t0759000-01	Rice	cytosol	23.14	55.26
Os03t0188400-01	Rice	nucleus	45.45	50.15
VIT_07s0191g00240.t01	Wine grape	nucleus	42.98	48.45
Os10t0376900-01	Rice	nucleus	42.7	47.26
Solyc11g010340.1.1	Tomato	nucleus	38.57	46.98
PGSC0003DMT400041644	Potato	nucleus	27.27	41.77
CDY37820	Canola	nucleus	23.69	39.45
Bra031865.1-P	Field mustard	nucleus	23.14	38.53
Os02t0691500-01	Rice	nucleus	38.84	37.8
AT5G65320.1	Thale cress	nucleus	28.93	35.47
CDY33966	Canola	nucleus	29.2	35.1
Os05t0597000-00	Rice	nucleus	20.94	33.48
Os03t0122100-00	Rice	mitochondrion, nucleus, plastid	25.34	29.58
Os05t0586300-00	Rice	nucleus	29.75	27.91
Os06t0526100-01	Rice	cytosol, endoplasmic reticulum, nucleus	21.76	20.0
Os02t0257500-00	Rice	nucleus	22.04	19.28

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:4345867	EMBL:AK107626	ProteinID:BAD09301.1	ProteinID:BAD10700.1
ProteinID:BAF23991.1	ProteinID:BAT05951.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	EMBL:HQ858861
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os08g0483900	EnsemblPlants:Os08t0483900-01	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR11969	PANTHER:PTHR11969:SF28	UniProt:Q6YTU1	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000023ADA4
RefSeq:XP_015649413.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

basic helix-loop-helix protein 047Helix-loop-helix DNA-binding domain containing protein. (Os08t0483900-01)

Coordinates

chr8:-:23894602..23896537

Molecular Weight (calculated)

38021.6 Da

IEP (calculated)

6.290

GRAVY (calculated)

-0.215

Length

363 amino acids

Sequence
(BLAST)

001: MALEAVVFSE GYYFGCGGAM AAEAAAGGAW SWSHGYGGGV DQGKGAMELV VDDGVVNAFW DGGGGGASSS PVMAAVSGFI EEPDGGNSSV ADAAPPPEHG
101: GASVVGRDGS AAAPAAAAGR RKRRRARTVK NREEVESQRM THIAVERNRR KQMNEYLAVL RSLMPASYVQ RGDQASIIGG AINYVKEMEQ LLQSLEAHRH
201: ARRARTDAAA ALPFAGFFTF PQYSMSAVPT TTTTTVAAAA TENGNAVAGA GAGDDADADV SGSKPSSVAD IEVTMVESHA NLKVLSRRRP RQLLRMVAGL
301: QHHRLAVLHL NVASAGHMAL YSLSLKVEED CQLTSVDDIA AAVHGIVETI EQEQQQQQKQ SCS

Best Arabidopsis Sequence Match ( AT1G72210.1 )
(BLAST)

001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS

Arabidopsis Description

BHLH96Transcription factor bHLH96 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7T4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.