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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 2
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc04g015280.2.1 Tomato cytosol, nucleus, plastid 96.79 96.43
VIT_00s0475g00020.t01 Wine grape cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 56.6 57.92
KRH36665 Soybean nucleus 58.87 56.73
KRH11654 Soybean nucleus, plastid 58.68 56.24
KRH51230 Soybean nucleus 53.96 55.21
TraesCS5B01G176000.2 Wheat mitochondrion 46.6 46.87
TraesCS5A01G178300.1 Wheat mitochondrion 46.6 46.87
Os09t0298500-01 Rice nucleus 46.98 46.8
Zm00001d020013_P001 Maize cytosol 45.66 46.01
GSMUA_Achr9P22360_001 Banana plastid 34.53 45.19
CDY17702 Canola mitochondrion 31.89 43.9
Bra024913.1-P Field mustard mitochondrion 43.02 43.68
TraesCS5D01G182800.1 Wheat cytosol, plastid 46.79 43.66
OQU89212 Sorghum cytosol 45.28 42.93
CDX77800 Canola nucleus 43.02 40.14
PGSC0003DMT400091492 Potato nucleus 7.92 24.85
PGSC0003DMT400020896 Potato mitochondrion, plastid 24.72 17.87
PGSC0003DMT400059986 Potato nucleus 24.34 17.74
PGSC0003DMT400054479 Potato plastid 22.45 16.81
PGSC0003DMT400078676 Potato plastid 20.94 15.61
PGSC0003DMT400016355 Potato nucleus 20.75 14.59
PGSC0003DMT400085780 Potato nucleus 8.49 11.54
Protein Annotations
EntrezGene:102590531Gene3D:3.30.40.10Gene3D:3.40.50.410MapMan:35.1InterPro:IPR001841InterPro:IPR002035
InterPro:IPR013083InterPro:IPR036465UniProt:M1CLK5PFAM:PF13519PFAM:PF13639EnsemblPlantsGene:PGSC0003DMG400027228
PGSC:PGSC0003DMG400027228EnsemblPlants:PGSC0003DMT400070011PFscan:PS50089PANTHER:PTHR10579PANTHER:PTHR10579:SF47SMART:SM00184
SUPFAM:SSF53300SUPFAM:SSF57850UniParc:UPI000295D4F3InterPro:VWF_ARefSeq:XP_006350231.1InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHDSEG:segInterPro:vWFA_dom_sf:::
Description
Zinc finger, RING-type [Source:PGSC_GENE;Acc:PGSC0003DMG400027228]
Coordinates
chr4:+:9530698..9534896
Molecular Weight (calculated)
59296.7 Da
IEP (calculated)
7.937
GRAVY (calculated)
-0.279
Length
530 amino acids
Sequence
(BLAST)
001: MGIFAGESSL SYSGKLKRVV KKILVQTCGS FRCGYQNPPS DEPDNNNNNT SEFPYPANNL ELFNHTSVIN PSRLDSTTNT PSNKNFCPIC LDSLSYSCDS
101: SPGQAIFTAQ CSHAFHFACI SSNIRHGNVT CPVCRAHWTQ LPRTLKMHYS PHSNQADPIL QILDESIATS RVHRRSFLRS ARYDDDDPVE PDHTSNIHRL
201: HLSLSPVPHS TSVFDPCSNP KSSFSSCHYP QHCLEPSQSA AQHFVETGLS PLVCSSSSSA YLCLKLAHQP ATDLVLVASP NGPHLRLMKQ AMAFVVFSLR
301: PIDRLAIVTY SSAAARIFPL KCMTSYGKRT ALQVIDRLFY MGQADPVEGL KKGVKILRER SHQNTHSFIL HLSDNPTRSF HGFHLELPIT IHKFHVGFGF
401: GTSNGFVMHE FERFLAKILC GAVRDIALMI GEDTRIVRLG ELRGGEERRI PLLLEELDKV RVVYTYIDCM MDDSVKTGEV VVGVGDRKEL TDTIDIVENT
501: GGRSSSVEGW EYHDPFMARR WAKRLHGYRI
Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)
001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR
Arabidopsis Description
Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.