Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g069470.2.1 | Tomato | plastid | 97.03 | 97.03 |
| VIT_00s0125g00180.t01 | Wine grape | plasma membrane | 59.04 | 60.06 |
| PGSC0003DMT400059986 | Potato | nucleus | 45.62 | 44.43 |
| PGSC0003DMT400091492 | Potato | nucleus | 10.59 | 44.38 |
| PGSC0003DMT400020896 | Potato | mitochondrion, plastid | 44.21 | 42.7 |
| PGSC0003DMT400078676 | Potato | plastid | 26.55 | 26.44 |
| PGSC0003DMT400016355 | Potato | nucleus | 27.97 | 26.26 |
| PGSC0003DMT400070011 | Potato | nucleus | 16.81 | 22.45 |
| PGSC0003DMT400085780 | Potato | nucleus | 10.31 | 18.72 |
Protein Annotations
| EntrezGene:102584962 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:IPR001841 | InterPro:IPR002035 | InterPro:IPR013083 |
| InterPro:IPR036465 | UniProt:M1BWE2 | PFAM:PF00092 | PFAM:PF14624 | PFAM:PF17123 | EnsemblPlantsGene:PGSC0003DMG400021143 |
| PGSC:PGSC0003DMG400021143 | EnsemblPlants:PGSC0003DMT400054479 | PFscan:PS50089 | PFscan:PS50234 | PANTHER:PTHR10579 | PANTHER:PTHR10579:SF97 |
| SMART:SM00184 | SMART:SM00327 | SUPFAM:SSF53300 | SUPFAM:SSF57850 | UniParc:UPI0002950BAF | InterPro:VWF_A |
| InterPro:Vwaint_dom | RefSeq:XP_006353051.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | InterPro:vWFA_dom_sf |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021143]
Coordinates
chr2:-:28600289..28604907
Molecular Weight (calculated)
76319.1 Da
IEP (calculated)
7.648
GRAVY (calculated)
-0.285
Length
708 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSWSKLQK ALSFRQPKSP PENASSDAKS PPSTRPSSVA SSSTFSRFTR SFSSTSRSSK RTCAICLGSM KAGNGQAIFT AECAHSFHFS CIANSVKHGN
101: YLCPICRCKW KEIPLMSSFS TDVNTNNAGR TRVSPLEDNY LDNIPRVPPP VSLPLPEPLH FSDDEHLPSI TVDQTPSPST VHPETAVLKA FPEYSAVAAS
201: GSMSRFAVLV GVRAPPLADD VRHQERAPID LVTVLDISGS MAGSKLTLLK QAVCFVIDNL GPSDRLSIVT FSSGAQRNFP LRRMTEQGRR EAALAVNAIS
301: ANGGTNIVEG LKKGVRVLEE RRERNPVASI VLLSDGRDTY NGDNANQRRS PRNRRSSNAT SGPDFLNLLP SSICPRNREG LAAGQLPTFH VHTFGFGLDH
401: DSSAMHAISD ASGGTFSFIE TVGTVQDAFA MCIGGLLSVV VQELKLTVRS ASRGVEIGSI PSGRYASEIS EQGKQGVINI GNLYADEEKE FLVYLSVPSA
501: EIEQGATKTS LLQITCSYKN TTSEEMVSVE GETVEIRRPP VLSPTDVVIS CEVDRQINRL AVAETIAEAQ QLAEMGNLEA AQAALTNRRA TLLSSVSAQA
601: GDALCSWLDM ELTEVRERMV SRERYEQTGR AYVLSGLSSH SWQRATTRGD TTSQILLQGG SSSNSGAAMY ETPSMVSMIS KSQNLSLVNR AEQVHRPNKS
701: CNLPPPPS
101: YLCPICRCKW KEIPLMSSFS TDVNTNNAGR TRVSPLEDNY LDNIPRVPPP VSLPLPEPLH FSDDEHLPSI TVDQTPSPST VHPETAVLKA FPEYSAVAAS
201: GSMSRFAVLV GVRAPPLADD VRHQERAPID LVTVLDISGS MAGSKLTLLK QAVCFVIDNL GPSDRLSIVT FSSGAQRNFP LRRMTEQGRR EAALAVNAIS
301: ANGGTNIVEG LKKGVRVLEE RRERNPVASI VLLSDGRDTY NGDNANQRRS PRNRRSSNAT SGPDFLNLLP SSICPRNREG LAAGQLPTFH VHTFGFGLDH
401: DSSAMHAISD ASGGTFSFIE TVGTVQDAFA MCIGGLLSVV VQELKLTVRS ASRGVEIGSI PSGRYASEIS EQGKQGVINI GNLYADEEKE FLVYLSVPSA
501: EIEQGATKTS LLQITCSYKN TTSEEMVSVE GETVEIRRPP VLSPTDVVIS CEVDRQINRL AVAETIAEAQ QLAEMGNLEA AQAALTNRRA TLLSSVSAQA
601: GDALCSWLDM ELTEVRERMV SRERYEQTGR AYVLSGLSSH SWQRATTRGD TTSQILLQGG SSSNSGAAMY ETPSMVSMIS KSQNLSLVNR AEQVHRPNKS
701: CNLPPPPS
001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR
Arabidopsis Description
Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.