Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0135g00160.t01 | Wine grape | nucleus | 95.82 | 95.82 |
| Solyc02g032370.1.1 | Tomato | endoplasmic reticulum, extracellular | 10.45 | 25.86 |
| VIT_18s0001g08100.t01 | Wine grape | plastid | 59.23 | 22.46 |
| Solyc02g032340.1.1 | Tomato | mitochondrion | 12.89 | 22.02 |
| PGSC0003DMT400091492 | Potato | nucleus | 12.89 | 21.89 |
| Solyc02g032430.1.1 | Tomato | plasma membrane | 11.85 | 20.48 |
| VIT_07s0205g00030.t01 | Wine grape | nucleus | 39.37 | 17.23 |
| PGSC0003DMT400085780 | Potato | nucleus | 14.29 | 10.51 |
| VIT_00s0475g00020.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 13.59 | 7.53 |
| VIT_06s0004g02630.t01 | Wine grape | mitochondrion, nucleus | 18.82 | 7.41 |
| VIT_13s0019g04440.t01 | Wine grape | endoplasmic reticulum | 17.42 | 7.04 |
| VIT_00s0125g00180.t01 | Wine grape | plasma membrane | 14.29 | 5.89 |
| CDX93598 | Canola | endoplasmic reticulum, golgi, mitochondrion, vacuole | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_15s0024g01790 | EMBL:FN596748 | EnsemblPlants:VIT_15s0024g01790.t01 | EnsemblPlantsGene:VIT_15s0024g01790 | Gene3D:3.30.40.10 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10579 | PANTHER:PTHR10579:SF55 | PFAM:PF17123 |
| PFscan:PS50089 | ProteinID:CBI39951 | ProteinID:CBI39951.3 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0001BE5556 | UniProt:D7UB27 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr15:-:3808171..3809034
Molecular Weight (calculated)
31090.7 Da
IEP (calculated)
8.948
GRAVY (calculated)
-0.559
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGILEKEQ TTGRAHYFLA CWVRGTVSVP TSSRLGPLFK SKSLDAFTSP LENPPDNDDL LGNGGESDLQ PLLTENSPIS GLSSTLFKSS PSPRSGTKLG
101: LFSSGSNTST PRMQSQPVSR PSLRCRTTVA AAQTPSIDES PKLQAKTTTP TDTVKTPRSL LSSNPSSPRS PLKFSIFRNS FKLRNSYGIC LQSVKTGQGT
201: TIYTAECSHA FHFSCIAAHV RKQGSLVCPV CNTTWKDEPL LMIHKNRKPE EDEVSHREHE EMAQAAVSNG KREDDMTMGP TKQCSLG
101: LFSSGSNTST PRMQSQPVSR PSLRCRTTVA AAQTPSIDES PKLQAKTTTP TDTVKTPRSL LSSNPSSPRS PLKFSIFRNS FKLRNSYGIC LQSVKTGQGT
201: TIYTAECSHA FHFSCIAAHV RKQGSLVCPV CNTTWKDEPL LMIHKNRKPE EDEVSHREHE EMAQAAVSNG KREDDMTMGP TKQCSLG
001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF
Arabidopsis Description
WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.