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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • nucleus 2
  • mitochondrion 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, peroxisome, plastid
BaCelLo:plastid
ChloroP:plastid
MultiLoc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:peroxisome
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY31616 Canola nucleus 74.7 80.35
CDX72660 Canola cytosol, nucleus, peroxisome, plastid 74.42 80.29
Bra017859.1-P Field mustard plastid 67.12 78.48
AT2G22680.1 Thale cress cytosol, peroxisome, plastid 61.98 67.06
KRH74431 Soybean mitochondrion 46.14 50.15
KRH45468 Soybean cytosol, peroxisome 27.2 49.88
KRH39527 Soybean extracellular, golgi 35.72 48.8
PGSC0003DMT400078676 Potato plastid 46.14 47.96
Solyc02g091710.2.1 Tomato plastid 46.41 47.77
VIT_07s0205g00030.t01 Wine grape nucleus 41.68 46.95
AT5G65683.1 Thale cress peroxisome, plastid 43.84 45.19
KRH75634 Soybean nucleus 39.24 44.75
AT5G49665.1 Thale cress plastid 39.38 39.32
Os04t0101800-01 Rice cytosol, mitochondrion, peroxisome, plastid 35.45 38.03
GSMUA_Achr5P14740_001 Banana mitochondrion 35.18 37.57
Zm00001d024940_P001 Maize peroxisome 36.13 36.23
TraesCS2D01G043700.1 Wheat peroxisome 37.21 36.04
TraesCS2A01G045100.1 Wheat peroxisome 36.94 35.92
GSMUA_Achr7P01890_001 Banana mitochondrion 34.51 35.71
KRH45469 Soybean nucleus 8.53 35.59
TraesCS2B01G057300.1 Wheat peroxisome 37.08 35.58
Zm00001d004553_P001 Maize peroxisome 35.86 35.33
GSMUA_Achr4P22090_001 Banana nucleus 34.1 35.24
GSMUA_Achr4P20870_001 Banana cytosol, mitochondrion, nucleus, peroxisome 34.64 34.97
OQU81040 Sorghum peroxisome 32.07 33.15
AT1G08050.1 Thale cress plastid 22.19 25.59
AT5G60710.1 Thale cress extracellular, mitochondrion, plastid 23.55 24.72
AT3G54780.4 Thale cress endoplasmic reticulum, extracellular, plastid 22.19 24.05
AT2G38970.1 Thale cress mitochondrion 21.79 23.27
Protein Annotations
MapMan:26.3.1.6Gene3D:3.30.40.10Gene3D:3.40.50.410EntrezGene:829945ProteinID:AEE86849.1EMBL:AK117301
ArrayExpress:AT4G37890EnsemblPlantsGene:AT4G37890RefSeq:AT4G37890TAIR:AT4G37890RefSeq:AT4G37890-TAIR-GEnsemblPlants:AT4G37890.1
TAIR:AT4G37890.1Unigene:At.31220EMBL:BT005963ProteinID:CAB37529.1ProteinID:CAB80454.1Symbol:EDA40
UniProt:F4JSV3GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005623
GO:GO:0005886GO:GO:0007275GO:GO:0008150GO:GO:0009506GO:GO:0009987GO:GO:0010197
GO:GO:0016020GO:GO:0016043GO:GO:0016740GO:GO:0030154GO:GO:0046872InterPro:IPR001841
InterPro:IPR002035InterPro:IPR013083InterPro:IPR036465RefSeq:NP_195502.2PFAM:PF00092PFAM:PF17123
PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS50089
PANTHER:PTHR10579PANTHER:PTHR10579:SF59SMART:SM00184SMART:SM00327SUPFAM:SSF53300SUPFAM:SSF57850
UniParc:UPI0000196F37InterPro:VWF_AInterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDSEG:segInterPro:vWFA_dom_sf
Description
EDA40Probable E3 ubiquitin-protein ligase EDA40 [Source:UniProtKB/Swiss-Prot;Acc:F4JSV3]
Coordinates
chr4:-:17812736..17815084
Molecular Weight (calculated)
81483.7 Da
IEP (calculated)
10.124
GRAVY (calculated)
-0.455
Length
739 amino acids
Sequence
(BLAST)
001: MMNGLRRTFW SSIHKKKDNN RVDDSLDRQK PTTTSRFGFF SNPSTPRSET RPDSVTCSPT IPCQSWSATA ISTPSPSLPA SPKLQCDTSG DVTPTRNRSP
101: LSFLSVSSSS STPSSPKSPA SFSLLKSKLC FTKVRILNRN NQVNIFKNNS KLTFLRLCYE QSSISSSKCG ICLQSAKAGR GTAIFTAECS HTFHFPCVAS
201: RAGDRNLLSD CPVCGASWRE TSLLPLSLSS SLHESGSESD SKIRESKNNN KSLRVYNDDE PLISSPISRT GFNTIPESNE DEEEEDNDDG EFKGFYVNTP
301: SPLTTKKMLT DSVTGHVDVK LSSEAAIVAV GRGNETYSVL MKIKSPSLPT ARRSPVDLVT VIDVSGGNIE MVKRAMRQVI SSLRETDRLS MVSFSSSSKR
401: LTPLRRMTAN GRRLARRIVD DISGDGDGMS VNDAVKKAAK VIEDRRQKNL FTTIFVLTDR NRNSAHQAQL AQPDFVTSTR FSHLEIPTHT IWLGACNHAL
501: PEDVFAKRIK SLLSLSVQDL TLNLGLVSGS GQGKVTSVYS LSGRPVWLGS GLIRLGDMYG DEEREVLVEL KSPSSSRSQR IMTVRSRHVD PTTQEIKNYE
601: DRALMIPRPT TVRSSDPSIA RLRNLHVSTR AVAESRRLVE VNDYSGAERM LTSARALLVQ YGLSSSDSCL RGLEAELADL NRLRGRHVAV KSPEPVVQKS
701: EPLTPTSAWR AAERLAKVAI MRKHMNRVSD LHGFENARF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.