CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH54704
KRH63230

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68060.1	KRH54704	AT5G61010.1	21798944
AT1G68060.1	KRH63230	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41720	Soybean	cytosol	97.24	97.24
KRH49658	Soybean	cytosol	88.64	89.36
KRH70354	Soybean	endoplasmic reticulum	88.31	88.89
VIT_01s0011g05790.t01	Wine grape	cytosol	85.06	82.26
Solyc01g005330.2.1	Tomato	cytosol	81.01	80.23
PGSC0003DMT400075913	Potato	cytosol	80.03	79.9
PGSC0003DMT400051425	Potato	cytosol, nucleus, plasma membrane	80.84	79.81
Solyc04g008040.2.1	Tomato	nucleus	79.87	79.74
PGSC0003DMT400056068	Potato	cytosol	79.55	78.78
Solyc05g017980.2.1	Tomato	cytosol	79.38	78.62
AT1G68060.1	Thale cress	nucleus, plastid	76.14	75.4
AT1G14840.1	Thale cress	plastid	73.38	74.83
CDX84971	Canola	cytosol	74.68	74.8
CDY07403	Canola	nucleus, plastid	74.68	74.43
CDX96050	Canola	nucleus, plastid	75.49	74.4
Bra004279.1-P	Field mustard	nucleus, plastid	75.49	74.4
Os02t0736100-01	Rice	cytosol	72.24	74.29
CDY40783	Canola	plastid	73.86	74.23
Bra004053.1-P	Field mustard	nucleus, plastid	74.35	74.11
CDY27573	Canola	nucleus, plastid	75.0	73.8
TraesCS6B01G328200.1	Wheat	cytosol	68.83	73.74
CDY04200	Canola	plastid	73.7	73.58
Bra012493.1-P	Field mustard	nucleus	73.05	73.41
CDY01879	Canola	nucleus	74.35	73.4
TraesCS6D01G278500.1	Wheat	cytosol	71.1	73.12
CDY03865	Canola	nucleus	73.05	73.05
Bra010978.1-P	Field mustard	nucleus	72.4	73.0
CDX81676	Canola	plastid	70.13	72.97
Bra025859.1-P	Field mustard	nucleus	53.57	72.85
TraesCS6A01G298800.1	Wheat	cytosol	70.62	72.62
CDY33736	Canola	nucleus	71.1	72.4
Bra026800.1-P	Field mustard	nucleus	70.62	72.38
Bra032784.1-P	Field mustard	nucleus	69.97	72.32
CDY45293	Canola	nucleus	70.45	72.21
EER89530	Sorghum	nucleus	70.94	72.11
EES07297	Sorghum	cytosol	68.99	72.03
TraesCS7D01G204000.1	Wheat	nucleus	70.94	71.99
CDY51769	Canola	nucleus	70.29	71.93
Zm00001d017961_P003	Maize	cytosol	68.83	71.86
TraesCS7A01G200700.1	Wheat	nucleus	70.78	71.83
TraesCS7B01G107500.1	Wheat	nucleus	70.78	71.83
Bra026184.1-P	Field mustard	nucleus	69.48	71.81
CDY36126	Canola	nucleus	71.92	71.8
AT2G01750.2	Thale cress	nucleus	73.38	71.75
Os06t0251700-01	Rice	nucleus	70.78	71.71
Zm00001d037291_P001	Maize	nucleus	70.45	71.62
Zm00001d044724_P001	Maize	cytosol	70.45	71.62
CDY17639	Canola	nucleus, plastid	71.92	71.11
Bra024854.1-P	Field mustard	nucleus, plastid	72.4	70.79
CDY36256	Canola	nucleus, plastid	71.1	70.42
HORVU7Hr1G041170.1	Barley	nucleus	70.29	69.84
KRH66768	Soybean	mitochondrion	52.92	66.26
AT1G24764.3	Thale cress	endoplasmic reticulum, extracellular	74.51	66.23
KRG95100	Soybean	nucleus	62.99	66.1
HORVU0Hr1G017080.1	Barley	nucleus, plastid	70.13	64.09
CDY24415	Canola	nucleus	24.51	59.22
KRH11576	Soybean	cytosol	42.37	45.71
KRH51187	Soybean	cytosol	42.21	45.38
KRH36588	Soybean	cytosol	41.88	45.18
KRH01966	Soybean	mitochondrion	40.91	44.68

Protein Annotations

EMBL:ACUP02003364	EnsemblPlants:KRH60419	EnsemblPlantsGene:GLYMA_05G239100	EntrezGene:100796575	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007010	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
InterPro:MAP70	ncoils:Coil	PANTHER:PTHR31246	PANTHER:PTHR31246:SF2	PFAM:PF07058	ProteinID:KRH60419
ProteinID:KRH60419.1	SEG:seg	UniParc:UPI000233A874	UniProt:I1K5K2	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr5:+:41493573..41498474

Molecular Weight (calculated)

68685.6 Da

IEP (calculated)

9.291

GRAVY (calculated)

-0.777

Length

616 amino acids

Sequence
(BLAST)

001: MAEVSGEGVA EATVSTPAPP LAVSGSFKEG KSSSRRRAHS MRPSLDADEF MNLLHGSDPV KVELNRLENE VRDKDRELSE AQAEIKALRL SERLREKAVE
101: ELTEELSRVE GKLKLTESLL ESKNLEIKKI NDEKKASMAA QFAAEATLRR VHAAQKDDDM PPIEAILAPL EAELKLARQE IAKLQDDNKA LDRLTKSKEA
201: ALIEAEKTVQ IALAKASMVD DLQNKNQELI KQIEICQEEN KILDKMHRLK VAEVEKLTQT VRELEEAVLA GGAAANAVRD YQRKVQEMNE ERKTLDRELA
301: RAKVTANRVA VVVANEWKDA NDKVMPVKQW LEERRFLQGE MQQLRDKLAI TERTAKSEAQ LKEKYQLRLK VLQDSLRETS NSINRGTSEG RCVSNGPSRR
401: QSLGGSDNIS KLASNGFLKR SPSTQIRSSV SSSTVLKHAK GTSKSFDGGT RSLERSKILL NGKPPSYSFN QSSEGTKDGE ENDKWKGNSD DKPNDLPTVD
501: TEDSVPGVLY DLLQKEVLAL RKAGHEKDQS LKDKDDAIEM LAKKVDTLTK AMEVEAKKMR REVASMEKEV AAMRVEKEQE SRAKRFSNVK GTVNSAQHQL
601: VSGRNVARGG LTRSTQ

Best Arabidopsis Sequence Match ( AT1G24764.1 )
(BLAST)

001: MSDVSGDGDL SATVTEHEVT PQPPVSSATY PSLTVSASYK ESSGGKSSSK RRPIRPSFDA AADNEFITLL HGSDPVKVEL NRLENEVRDK DRELGEANAE
101: IKALRLSERQ REKAVEELTE ELTKLDEKLK LTESILESKN LEIKKINEEK KASMAAQFAA EATLRRVHAA QKDDDMPPIE AILAPLEAEL KLARSEIGKL
201: QEDNRALDRL TKSKEAALLE AERTVEAAMA KAAMVDDLQN KNQELMKQIE ICQEENKILD RMHRQKVAEV EKLTQTVREL EEAVLAGGAA ANAVRDYQRK
301: FQEMNEERKT LDRELARAKV TANRVATVVA NEWKDGNDKV MPVKQWLEER RFLQGEMQQL RDKLAITDRA AKSEAQLKEK FQLRLKVLEE TLRGTSSSAT
401: RNTPEARSMS NGPSRRQSLG GAENLQKFTS NGALSKKAPA SQMRHSLSIN STSVLKNAKG TSKSFDGGTR SVDRGKALLN GPGNYSFNKA TDDSKEAESG
501: NGWKENSEEK PQSEDPEAAT EDSVPGVLYD LLQKEVVSLR KASNEKDQSL KDKDDAIEML AKKVETLTKA MEVEAKKMRR EVAAMEKEVA AMRVEKDQDA
601: RAKRFSNSKS PSNTAQILAG RAAGRSGGLT KSTQ

Arabidopsis Description

ATMAP70-2microtubule-associated proteins 70-2 [Source:TAIR;Acc:AT1G24764]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.