CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45293	Canola	nucleus	98.34	98.5
AT1G14840.1	Thale cress	plastid	89.87	89.57
CDX81676	Canola	plastid	86.21	87.67
CDY33736	Canola	nucleus	85.71	85.29
CDX84402	Canola	cytosol	7.64	75.41
CDY36256	Canola	nucleus, plastid	77.91	75.4
CDY17639	Canola	nucleus, plastid	75.58	73.03
KRH49658	Soybean	cytosol	73.09	72.01
KRH70354	Soybean	endoplasmic reticulum	72.26	71.08
CDX96050	Canola	nucleus, plastid	73.59	70.88
CDY07403	Canola	nucleus, plastid	72.76	70.87
CDY04200	Canola	plastid	72.43	70.66
CDX84971	Canola	cytosol	72.09	70.57
KRH41720	Soybean	cytosol	72.09	70.45
KRH60419	Soybean	cytosol, plastid	71.93	70.29
CDY27573	Canola	nucleus, plastid	72.76	69.97
CDY01879	Canola	nucleus	72.43	69.87
CDY40783	Canola	plastid	71.1	69.82
PGSC0003DMT400075913	Potato	cytosol	71.1	69.37
CDX95376	Canola	cytosol	7.14	69.35
Solyc04g008040.2.1	Tomato	nucleus	70.93	69.21
Solyc05g017980.2.1	Tomato	cytosol	71.43	69.13
PGSC0003DMT400056068	Potato	cytosol	71.43	69.13
CDY03865	Canola	nucleus	70.6	68.99
PGSC0003DMT400051425	Potato	cytosol, nucleus, plasma membrane	71.1	68.59
Solyc01g005330.2.1	Tomato	cytosol	70.76	68.49
VIT_01s0011g05790.t01	Wine grape	cytosol	71.76	67.82
Os02t0736100-01	Rice	cytosol	66.94	67.28
CDY36126	Canola	nucleus	68.94	67.26
TraesCS6D01G278500.1	Wheat	cytosol	65.78	66.11
TraesCS6B01G328200.1	Wheat	cytosol	63.12	66.09
TraesCS7D01G204000.1	Wheat	nucleus	66.28	65.73
TraesCS7B01G107500.1	Wheat	nucleus	66.11	65.57
TraesCS7A01G200700.1	Wheat	nucleus	66.11	65.57
Os06t0251700-01	Rice	nucleus	66.11	65.46
TraesCS6A01G298800.1	Wheat	cytosol	64.95	65.28
EER89530	Sorghum	nucleus	64.95	64.52
EES07297	Sorghum	cytosol	62.96	64.24
Zm00001d037291_P001	Maize	nucleus	64.45	64.03
HORVU7Hr1G041170.1	Barley	nucleus	65.78	63.87
Zm00001d044724_P001	Maize	cytosol	64.12	63.7
Zm00001d017961_P003	Maize	cytosol	62.29	63.56
CDX95377	Canola	cytosol	6.48	61.9
HORVU0Hr1G017080.1	Barley	nucleus, plastid	66.28	59.2
CDY24415	Canola	nucleus	21.59	50.98
CDY42967	Canola	cytosol, nucleus, plasma membrane	38.04	45.8
CDY35590	Canola	cytosol	38.54	45.14
CDX90483	Canola	cytosol	37.21	44.53
CDY09638	Canola	cytosol	36.88	44.14

Protein Annotations

EnsemblPlants:CDY51769	EnsemblPlantsGene:GSBRNA2T00004201001	GO:A0A078IQS0	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007010	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:MAP70
ncoils:Coil	PANTHER:PTHR31246	PANTHER:PTHR31246:SF2	PFAM:PF07058	ProteinID:CDY51769	ProteinID:CDY51769.1
SEG:seg	UniParc:UPI0004EDD71C	UniProt:A0A078IQS0	MapMan:35.1	:	:

Description

BnaC05g49520DBnaC05g49520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQS0]

Coordinates

chrLK033025:-:21919..25500

Molecular Weight (calculated)

67312.2 Da

IEP (calculated)

10.077

GRAVY (calculated)

-0.787

Length

602 amino acids

Sequence
(BLAST)

001: MEERGFMSPS LASYREGGGG GSKGLSRRRP MRPSFDADNE FITLLHGSDP VRIELNRLEN ELRDKDRELS EAQAEIKALK LSERQREKAV EELTDELGKM
101: SAKLKLIENL LETKNLEIKK INEEKKASMA AQFAAEASLR RVHAAQKDDD MPPIEAILAP LEAELKLARQ EIVKLQDDNK SLDRLTKSKE AALLDAERTV
201: QSALAKASMV DDLQNKNQEL MKQIEICQEE NRIIDKMHRQ KVAEVEKLMQ SVRELEEAVL AGGAAANAVR DYQRKFQEMN EERKILEREL ARAKVNANRV
301: ATVVANEWKD SNDQVMPVRQ WLEERRFMQG EMQQLRDKLA IADRAAKSEA QLKEKFLLRL RVLEESLKKP SNRGTPVVRS SSNGPTRRQS LVGAETSPKY
401: SSSNGSVTKS RPSSQPRSAT ASASTVLKHA RGTSSSFDGG TRSLDRNKVL MNRPGSKFPS NHHSSEGATR VESPSSIKVE ESDDKSTDND SVPGVLYDLL
501: QKEVITLRKA AHEKDQSLRD KDDAIEMLAK KVETLTKAME VEAKKMRREV AVMGKEVAAM RVDKGHQDSK TRRISSISKG SSNTAQLLSG RVSGRIGMTK
601: ST

Best Arabidopsis Sequence Match ( AT1G14840.1 )
(BLAST)

001: MEERGFMSPS LAISASYREG GSKGMSRRRS MRPSFDADNE FMNLLHGSDP VRIELNRLEN EVRDKDRELS EGQAEIKALR LSERQREKAV EELTEELGKM
101: AEKLKLIENL LESKNLEIKK INEEKKASMA AQFAAEASLR RVHAAQKDDD MPPIEAILAP LEAELKLSRQ EIAKLQDDNK SLDRLTKSKE AALLDAERTV
201: QSALAKASMV DDLQNKNQEL MKQIEICQEE NRIIDKMHRQ KVAEVEKLMQ SVRELEEAVL AGGAAANAVR DYQRKFQEMN EERKILEREL ARAKVNANRV
301: ATVVANEWKD SNDKVMPVRQ WLEERRFLQG EMQQLRDKLA IADRAAKSEA QLKEKFLLRL RVLEESLKGP TSSSSRGTSV GRSSSNGPTR RQSLGGAETS
401: PKITSNGSLI KRTPSSQLRS LTASASTVLK HAKGTSRSFD GGTRSLDRSK VLINGPRSNF PLNHKSSEGT SRGESPSSIK GEEESADKAT NNDSVPGVLY
501: DLLQKEVITL RKAAHEKDQS LRDKDEAIEM LAKKVETLTK AMDVEAKKMR REVAVMGKEV AAMRVVDKGQ QDSKTRRLSV SKGNTAQLLS GRVSGRIGMT
601: RSTQ

Arabidopsis Description

MAP70.4Microtubule-associated protein 70-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQU7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.