Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G554500.1 | Wheat | cytosol | 66.13 | 10.96 |
| Os12t0640900-01 | Rice | nucleus | 72.58 | 7.94 |
| KXG24157 | Sorghum | nucleus | 70.97 | 7.64 |
| TraesCS5D01G000100.1 | Wheat | cytosol | 70.97 | 7.61 |
| TraesCS5B01G000600.2 | Wheat | cytosol | 69.35 | 7.4 |
| HORVU5Hr1G000150.1 | Barley | cytosol, mitochondrion | 70.97 | 7.37 |
| CDY40783 | Canola | plastid | 72.58 | 7.34 |
| CDX84971 | Canola | cytosol | 72.58 | 7.32 |
| CDY04200 | Canola | plastid | 72.58 | 7.29 |
| CDY07403 | Canola | nucleus, plastid | 72.58 | 7.28 |
| CDY36256 | Canola | nucleus, plastid | 72.58 | 7.23 |
| CDY17639 | Canola | nucleus, plastid | 72.58 | 7.22 |
| CDX96050 | Canola | nucleus, plastid | 72.58 | 7.2 |
| CDY27573 | Canola | nucleus, plastid | 72.58 | 7.19 |
| CDY45293 | Canola | nucleus | 69.35 | 7.15 |
| CDY51769 | Canola | nucleus | 69.35 | 7.14 |
| CDY36126 | Canola | nucleus | 70.97 | 7.13 |
| CDX81676 | Canola | plastid | 67.74 | 7.09 |
| CDY01879 | Canola | nucleus | 70.97 | 7.05 |
| CDY03865 | Canola | nucleus | 69.35 | 6.98 |
| CDY33736 | Canola | nucleus | 67.74 | 6.94 |
| CDY42967 | Canola | cytosol, nucleus, plasma membrane | 40.32 | 5.0 |
| CDX90483 | Canola | cytosol | 38.71 | 4.77 |
| CDY09638 | Canola | cytosol | 37.1 | 4.57 |
| CDY35590 | Canola | cytosol | 37.1 | 4.47 |
| CDY24415 | Canola | nucleus | 3.23 | 0.78 |
| CDX95377 | Canola | cytosol | 0.0 | 0.0 |
| CDX84402 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX95376 | EnsemblPlantsGene:GSBRNA2T00101086001 | GO:A0A078E1Y1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0007010 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:MAP70 |
| PANTHER:PTHR31246 | PANTHER:PTHR31246:SF3 | PFAM:PF07058 | ProteinID:CDX95376 | ProteinID:CDX95376.1 | UniParc:UPI0004EF0E46 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC04g27820D
Coordinates
chrLK031888:-:812590..813836
Molecular Weight (calculated)
6814.4 Da
IEP (calculated)
7.361
GRAVY (calculated)
-0.040
Length
62 amino acids
Sequence
(BLAST)
(BLAST)
1: MAAQFAAEAT LRRVHAAQKD DDMPPIEAIL APLEAELKLA RSEGNDARKP LVGLVRVILR YC
001: MAAQFAAEAT LRRVHAAQKD DDMPPIEAIL APLEAELKLA RSEIGKLQED NRALDRLTKS KEAALLEAER TVEAAMAKAA MVDDLQNKNQ ELMKQIEICQ
101: EENKILDRMH RQKVAEVEKL TQTVRELEEA VLAGGAAANA VRDYQRKFQE MNEERKTLDR ELARAKVTAN RVATVVANEW KDGNDKVMPV KQWLEERRFL
201: QGEMQQLRDK LAITDRAAKS EAQLKEKFQL RLKVLEETLR GTSSSATRNT PEARSMSNGP SRRQSLGGAE NLQKFTSNGA LSKKAPASQM RHSLSINSTS
301: VLKNAKGTSK SFDGGTRSVD RGKALLNGPG NYSFNKATDD SKEAESGNGW KENSEEKPQS EDPEAATEDS VPGVLYDLLQ KEVVSLRKAS NEKDQSLKDK
401: DDAIEMLAKK VETLTKAMEV EAKKMRREVA AMEKEVAAMR VEKDQDARAK RFSNSKSPSN TAQILAGRAA GRSGGLTKST Q
101: EENKILDRMH RQKVAEVEKL TQTVRELEEA VLAGGAAANA VRDYQRKFQE MNEERKTLDR ELARAKVTAN RVATVVANEW KDGNDKVMPV KQWLEERRFL
201: QGEMQQLRDK LAITDRAAKS EAQLKEKFQL RLKVLEETLR GTSSSATRNT PEARSMSNGP SRRQSLGGAE NLQKFTSNGA LSKKAPASQM RHSLSINSTS
301: VLKNAKGTSK SFDGGTRSVD RGKALLNGPG NYSFNKATDD SKEAESGNGW KENSEEKPQS EDPEAATEDS VPGVLYDLLQ KEVVSLRKAS NEKDQSLKDK
401: DDAIEMLAKK VETLTKAMEV EAKKMRREVA AMEKEVAAMR VEKDQDARAK RFSNSKSPSN TAQILAGRAA GRSGGLTKST Q
Arabidopsis Description
ATMAP70-2microtubule-associated proteins 70-2 [Source:TAIR;Acc:AT1G24764]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.