CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY02176
CDY23090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68060.1	CDY02176	AT5G61010.1	21798944
AT1G68060.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07403	Canola	nucleus, plastid	93.84	93.69
CDX84402	Canola	cytosol	8.91	90.16
CDX96050	Canola	nucleus, plastid	90.44	89.28
AT1G68060.1	Thale cress	nucleus, plastid	89.47	88.75
CDY01879	Canola	nucleus	89.63	88.62
CDX84971	Canola	cytosol	83.63	83.9
CDY27573	Canola	nucleus, plastid	84.28	83.07
CDY40783	Canola	plastid	81.69	82.22
CDY36126	Canola	nucleus	81.85	81.85
CDY03865	Canola	nucleus	80.88	81.01
CDX95377	Canola	cytosol	8.27	80.95
KRH49658	Soybean	cytosol	75.36	76.1
KRH70354	Soybean	endoplasmic reticulum	74.88	75.49
Solyc04g008040.2.1	Tomato	nucleus	74.23	74.23
PGSC0003DMT400075913	Potato	cytosol	73.91	73.91
KRH41720	Soybean	cytosol	73.74	73.86
KRH60419	Soybean	cytosol, plastid	73.58	73.7
VIT_01s0011g05790.t01	Wine grape	cytosol	75.69	73.31
Solyc01g005330.2.1	Tomato	cytosol	73.91	73.31
PGSC0003DMT400056068	Potato	cytosol	73.74	73.15
PGSC0003DMT400051425	Potato	cytosol, nucleus, plasma membrane	73.91	73.08
CDX81676	Canola	plastid	69.85	72.8
CDY33736	Canola	nucleus	71.31	72.73
CDY45293	Canola	nucleus	70.83	72.71
CDX95376	Canola	cytosol	7.29	72.58
Solyc05g017980.2.1	Tomato	cytosol	73.1	72.51
CDY51769	Canola	nucleus	70.66	72.43
TraesCS6D01G278500.1	Wheat	cytosol	69.37	71.45
Os02t0736100-01	Rice	cytosol	69.21	71.29
TraesCS6A01G298800.1	Wheat	cytosol	68.56	70.62
TraesCS6B01G328200.1	Wheat	cytosol	65.8	70.61
CDY17639	Canola	nucleus, plastid	70.66	69.98
TraesCS7D01G204000.1	Wheat	nucleus	68.72	69.85
CDY36256	Canola	nucleus, plastid	70.18	69.61
TraesCS7A01G200700.1	Wheat	nucleus	68.4	69.52
TraesCS7B01G107500.1	Wheat	nucleus	68.4	69.52
EER89530	Sorghum	nucleus	67.75	68.98
CDY24415	Canola	nucleus	28.36	68.63
Zm00001d037291_P001	Maize	nucleus	67.26	68.48
EES07297	Sorghum	cytosol	65.48	68.47
Os06t0251700-01	Rice	nucleus	67.26	68.26
Zm00001d044724_P001	Maize	cytosol	66.94	68.15
HORVU7Hr1G041170.1	Barley	nucleus	68.23	67.9
Zm00001d017961_P003	Maize	cytosol	64.67	67.63
HORVU0Hr1G017080.1	Barley	nucleus, plastid	69.04	63.2
CDY35590	Canola	cytosol	38.41	46.11
CDY42967	Canola	cytosol, nucleus, plasma membrane	37.28	46.0
CDX90483	Canola	cytosol	37.44	45.92
CDY09638	Canola	cytosol	37.12	45.53

Protein Annotations

EnsemblPlants:CDY04200	EnsemblPlantsGene:GSBRNA2T00117907001	GO:A0A078EQH2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007010	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:MAP70
ncoils:Coil	PANTHER:PTHR31246	PANTHER:PTHR31246:SF2	PFAM:PF07058	ProteinID:CDY04200	ProteinID:CDY04200.1
SEG:seg	UniParc:UPI0004EF291C	MapMan:35.1	:	:	:

Description

BnaC06g26150D

Coordinates

chrLK031950:-:58657..61590

Molecular Weight (calculated)

68926.4 Da

IEP (calculated)

9.404

GRAVY (calculated)

-0.871

Length

617 amino acids

Sequence
(BLAST)

001: MSDVSADGGY SETPYPSLTV SASASASYKE RKSSSRRRPV RPSFDASAAA DNEFITLLHG SDPVKLELNR LENEVRDKDR ELGEAHAEIR ALRLSERQRE
101: KAVEELTDEL TKLEEKLKLT ESLLQGKNLE IRKINEEKKA SMAAQFAAEA TLRRVHAAQK DDDMPPIEAI LAPLEAELKL ARSEIGKLQE DNRALDRLTK
201: SKEAALLDAE RTVQTAMAKA ALVDDLQNKN QELMKQIEIC QEENKILDKM HRQKVAEVEK LTQTVRELEE AVLSGGAAAN AVRDYQRKFQ EMNEERKTLD
301: RELARAKVTA NRVATVVANE WKDGNDKVMP VKQWLEERRF LQGEMQQLRD KLAISDRAAK SEAQLKDKFQ LRLKVLEETL RGTSRNTTEG RSMSNGPSRR
401: QSLGGSDNLQ KFASNGFLPK KSPSSQMRNA FTSNSSSVLK NAKGTSRSFD GGTRSLDRGK ALLNGPGKYS FNKACDEAKE SESPSAWKED SEEKTTSELP
501: PPTTEDNVPG VLYDLLQKEV VALRKSSHEK DQSLKDKDDA IEMLAKKVET LTKAMEVEAK KMRREVAAME KEVAAMRVDK DQDNRTKRTS STKNSSNTAQ
601: ILAGRAAGRS GLTRSTQ

Best Arabidopsis Sequence Match ( AT1G68060.1 )
(BLAST)

001: MSDVSADGGF LSAEQATTPV AIPTPYPSLT VSASYKEKSS GRRRPVRPSF DAAADNEFIT LLHGSDPVKV ELNRLENEVR DKDRELSEAN AEIKALRLSE
101: RQREKACEEL TDELAKLDGK LKLTESLLQS KNLEIKKINE EKKASMAAQF AAEATLRRVH AAQKDDDMPP IEAILAPLEA ELKLARSEIG KLQEDNRALD
201: RLTKSKEAAL LDAERTVETA LAKAALVDDL QNKNQELMKQ IEICQEENKI LDRMHRQKVA EVEKLTQTVR ELEEAVLAGG AAANAVRDYQ RKFQEMNEER
301: KTLDRELARA KVTANRVATV VANEWKDGND KVMPVKQWLE ERRFLQGEMQ QLRDKLAISD RAAKSEAQLK DKFQLRLRVL EETLRGTSSI SIRNTPEGRS
401: MSNGPSRRQS IGGSDNLQKF ASNGFLSKKT PMRNSFTSNS TSVLKNAKGT SKSFDGGTRS LDRGKALLKG PGNYSFNKAC DETKESESPN TWKEDSEEKP
501: PSELPAPATE DNVPGVLYDL LQKEVVALRK SSHEKDQSLK DKDDAIEMLA KKVETLTKAM EVEAKKMRRE VAAMEKEVAA MRVDKDQDNR AKRSSNTKPS
601: SNTAQILAAR AAGRSGLTRS TQ

Arabidopsis Description

MAP70.1Microtubule-associated protein 70-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9X0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.