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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
MultiLoc:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G053230.7
HORVU1Hr1G053260.5
HORVU3Hr1G073850.1
HORVU3Hr1G073910.1
HORVU5Hr1G077580.3

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G68060.1 HORVU1Hr1G053230.7 AT2G45920.1 21798944
AT1G68060.1 HORVU1Hr1G053260.5 AT2G45920.1 21798944
AT1G68060.1 HORVU5Hr1G077580.3 AT2G45920.1 21798944
AT1G68060.1 HORVU3Hr1G073850.1 AT5G61010.1 21798944
AT1G68060.1 HORVU3Hr1G073910.1 AT5G61010.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7A01G200700.1 Wheat nucleus 95.16 97.2
TraesCS7B01G107500.1 Wheat nucleus 95.0 97.03
TraesCS7D01G204000.1 Wheat nucleus 94.68 96.71
EER89530 Sorghum nucleus 85.81 87.79
Os06t0251700-01 Rice nucleus 84.52 86.18
Zm00001d044724_P001 Maize cytosol 83.87 85.81
Zm00001d037291_P001 Maize nucleus 83.71 85.64
KRH49658 Soybean cytosol 71.45 72.5
KRH70354 Soybean endoplasmic reticulum 71.13 72.06
HORVU0Hr1G017080.1 Barley nucleus, plastid 77.26 71.07
KRH60419 Soybean cytosol, plastid 69.84 70.29
Solyc05g017980.2.1 Tomato cytosol 70.48 70.26
PGSC0003DMT400056068 Potato cytosol 70.48 70.26
VIT_01s0011g05790.t01 Wine grape cytosol 72.1 70.17
KRH41720 Soybean cytosol 69.52 69.97
Solyc01g005330.2.1 Tomato cytosol 70.16 69.94
PGSC0003DMT400051425 Potato cytosol, nucleus, plasma membrane 69.84 69.39
PGSC0003DMT400075913 Potato cytosol 68.23 68.56
HORVU5Hr1G000150.1 Barley cytosol, mitochondrion 65.97 68.51
CDY04200 Canola plastid 67.9 68.23
Solyc04g008040.2.1 Tomato nucleus 67.9 68.23
Bra025859.1-P Field mustard nucleus 49.68 67.99
CDY07403 Canola nucleus, plastid 67.74 67.96
Bra004053.1-P Field mustard nucleus, plastid 67.74 67.96
CDY40783 Canola plastid 66.94 67.7
CDX84971 Canola cytosol 67.1 67.64
AT1G14840.1 Thale cress plastid 65.65 67.38
Bra004279.1-P Field mustard nucleus, plastid 67.9 67.36
CDX96050 Canola nucleus, plastid 67.9 67.36
AT1G68060.1 Thale cress nucleus, plastid 67.26 67.04
CDY27573 Canola nucleus, plastid 67.58 66.93
CDY01879 Canola nucleus 67.26 66.83
Bra010978.1-P Field mustard nucleus 65.65 66.61
Bra012493.1-P Field mustard nucleus 65.81 66.56
Bra026800.1-P Field mustard nucleus 64.52 66.56
CDY03865 Canola nucleus 65.97 66.4
CDX81676 Canola plastid 62.9 65.88
CDY51769 Canola nucleus 63.87 65.78
Bra026184.1-P Field mustard nucleus 63.23 65.77
CDY45293 Canola nucleus 63.71 65.72
CDY33736 Canola nucleus 63.87 65.45
Bra032784.1-P Field mustard nucleus 62.9 65.44
CDY36126 Canola nucleus 65.0 65.32
AT2G01750.2 Thale cress nucleus 64.68 63.65
CDY36256 Canola nucleus, plastid 63.71 63.5
Bra024854.1-P Field mustard nucleus, plastid 64.52 63.49
CDY17639 Canola nucleus, plastid 63.39 63.08
AT1G24764.3 Thale cress endoplasmic reticulum, extracellular 68.06 60.89
CDY24415 Canola nucleus 22.74 55.29
HORVU4Hr1G067630.12 Barley nucleus 32.9 38.86
Protein Annotations
EnsemblPlants:HORVU7Hr1G041170.1EnsemblPlantsGene:HORVU7Hr1G041170GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0007010
GO:GO:0008017GO:GO:0008150GO:GO:0009987GO:GO:0016043InterPro:MAP70ncoils:Coil
PANTHER:PTHR31246PANTHER:PTHR31246:SF4PFAM:PF07058SEG:segUniParc:UPI000B481BF6UniProt:A0A287W6Y2
MapMan:35.1:::::
Description
No Description!
Coordinates
chrchr7H:-:112969053..112976506
Molecular Weight (calculated)
68982.9 Da
IEP (calculated)
9.669
GRAVY (calculated)
-0.818
Length
620 amino acids
Sequence
(BLAST)
001: PACRGGPPGL RSEMADGGEE GNAAVPRGFS RRRGAVRASL DADELMALMH GSDPVRVELT RLENELRDKE RELGEAHTEI RALRLSERAR ENLVRQLTDE
101: LERMDEKLKL TESHLENKNL EVKKINDEKK AAMAAQFAAE ATLRRVHAAQ KDDDMPPIEA ILAPLEAELK LSRQEIAKLQ EDNRALDRLT KQKEAALLEA
201: ERTVQIAMAK AAMVDDLQNK NQDLMKQIEI CHEENKILDK LHRQKVAEVE KLSQTVRELE ESVLAGGAAA NAVRDYQRKV QEMNDERKTL DRELARAKVT
301: ANRVAVVVAN EWKDSNDKVM PVKQWLEERR FMQGEMQQLR DKLAVAERTA RSEAQLKEKF QLRLKVLEDG LRGPPSGSSR PPTEGKSFSN GPSRRLSLGG
401: ADNVSKVSPN GLLTRRSPSF HSRSSLSSSS SLILKHAKGT SKSFDGGTRS LDRGKVHGNG SHLLNKSTDA VKDREADDGW KGTVDEGTNG SPSSNADQKT
501: NETTNSNSIE MVSGFLYNML QKEVVSLRKA CHEKDQSLKD KDDAIEMLAR KVDTLTKAME VEAKKMRREV AAMEKEVAAM RVDKDQEIKA RRLGNSKGSG
601: SSQLLPGRSA PRSGLARNFQ
Best Arabidopsis Sequence Match ( AT1G14840.1 )
(BLAST)
001: MEERGFMSPS LAISASYREG GSKGMSRRRS MRPSFDADNE FMNLLHGSDP VRIELNRLEN EVRDKDRELS EGQAEIKALR LSERQREKAV EELTEELGKM
101: AEKLKLIENL LESKNLEIKK INEEKKASMA AQFAAEASLR RVHAAQKDDD MPPIEAILAP LEAELKLSRQ EIAKLQDDNK SLDRLTKSKE AALLDAERTV
201: QSALAKASMV DDLQNKNQEL MKQIEICQEE NRIIDKMHRQ KVAEVEKLMQ SVRELEEAVL AGGAAANAVR DYQRKFQEMN EERKILEREL ARAKVNANRV
301: ATVVANEWKD SNDKVMPVRQ WLEERRFLQG EMQQLRDKLA IADRAAKSEA QLKEKFLLRL RVLEESLKGP TSSSSRGTSV GRSSSNGPTR RQSLGGAETS
401: PKITSNGSLI KRTPSSQLRS LTASASTVLK HAKGTSRSFD GGTRSLDRSK VLINGPRSNF PLNHKSSEGT SRGESPSSIK GEEESADKAT NNDSVPGVLY
501: DLLQKEVITL RKAAHEKDQS LRDKDEAIEM LAKKVETLTK AMDVEAKKMR REVAVMGKEV AAMRVVDKGQ QDSKTRRLSV SKGNTAQLLS GRVSGRIGMT
601: RSTQ
Arabidopsis Description
MAP70.4Microtubule-associated protein 70-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQU7]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.