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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g115070.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G68060.1 Solyc03g115070.1.1 AT5G61010.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400056068 Potato cytosol 97.91 97.91
Solyc01g005330.2.1 Tomato cytosol 86.01 86.01
Solyc04g008040.2.1 Tomato nucleus 80.55 81.2
KRH70354 Soybean endoplasmic reticulum 78.46 79.74
KRH49658 Soybean cytosol 78.3 79.71
KRH60419 Soybean cytosol, plastid 78.62 79.38
KRH41720 Soybean cytosol 78.3 79.06
VIT_01s0011g05790.t01 Wine grape cytosol 79.26 77.39
Os02t0736100-01 Rice cytosol 71.06 73.79
AT1G68060.1 Thale cress nucleus, plastid 73.47 73.47
CDY07403 Canola nucleus, plastid 72.83 73.3
AT1G14840.1 Thale cress plastid 71.06 73.18
Bra004053.1-P Field mustard nucleus, plastid 72.67 73.14
CDY04200 Canola plastid 72.51 73.1
TraesCS6B01G328200.1 Wheat cytosol 67.2 72.7
CDX96050 Canola nucleus, plastid 72.99 72.64
Bra004279.1-P Field mustard nucleus, plastid 72.99 72.64
TraesCS7D01G204000.1 Wheat nucleus 70.74 72.49
TraesCS6D01G278500.1 Wheat cytosol 69.77 72.45
TraesCS6A01G298800.1 Wheat cytosol 69.77 72.45
CDX84971 Canola cytosol 71.54 72.36
TraesCS7B01G107500.1 Wheat nucleus 70.58 72.32
TraesCS7A01G200700.1 Wheat nucleus 70.58 72.32
CDY01879 Canola nucleus 72.35 72.12
CDY40783 Canola plastid 71.06 72.1
CDY27573 Canola nucleus, plastid 72.19 71.73
EER89530 Sorghum nucleus 69.77 71.62
CDY51769 Canola nucleus 69.13 71.43
Bra025859.1-P Field mustard nucleus 51.93 71.3
Os06t0251700-01 Rice nucleus 69.61 71.22
CDY45293 Canola nucleus 68.81 71.21
Bra026184.1-P Field mustard nucleus 68.17 71.14
CDX81676 Canola plastid 67.68 71.11
EES07297 Sorghum cytosol 67.36 71.02
Bra012493.1-P Field mustard nucleus 69.94 70.96
CDY33736 Canola nucleus 68.97 70.91
CDY03865 Canola nucleus 70.1 70.78
Bra010978.1-P Field mustard nucleus 69.45 70.7
Zm00001d044724_P001 Maize cytosol 68.81 70.63
Bra026800.1-P Field mustard nucleus 68.17 70.55
HORVU7Hr1G041170.1 Barley nucleus 70.26 70.48
Zm00001d037291_P001 Maize nucleus 68.65 70.46
Bra032784.1-P Field mustard nucleus 67.36 70.3
Zm00001d017961_P003 Maize cytosol 66.56 70.17
AT2G01750.2 Thale cress nucleus 70.9 70.0
CDY36126 Canola nucleus 69.13 69.69
Solyc12g021250.1.1 Tomato cytosol 15.11 69.63
CDY17639 Canola nucleus, plastid 69.13 69.02
CDY36256 Canola nucleus, plastid 68.97 68.97
Bra024854.1-P Field mustard nucleus, plastid 69.29 68.41
AT1G24764.3 Thale cress endoplasmic reticulum, extracellular 73.31 65.8
HORVU0Hr1G017080.1 Barley nucleus, plastid 69.94 64.54
CDY24415 Canola nucleus 23.31 56.86
Solyc04g015010.2.1 Tomato cytosol 41.16 52.57
Solyc11g012660.1.1 Tomato nucleus 42.28 46.96
Protein Annotations
EnsemblPlants:Solyc05g017980.2.1EnsemblPlantsGene:Solyc05g017980.2GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0007010
GO:GO:0008017GO:GO:0008150GO:GO:0009987GO:GO:0016043InterPro:MAP70ncoils:Coil
PANTHER:PTHR31246PANTHER:PTHR31246:SF2PFAM:PF07058SEG:segUniParc:UPI0002767043UniProt:K4BZ56
MapMan:35.1:::::
Description
No Description!
Coordinates
chr5:+:19336286..19343775
Molecular Weight (calculated)
69351.4 Da
IEP (calculated)
8.789
GRAVY (calculated)
-0.788
Length
622 amino acids
Sequence
(BLAST)
001: MAEDGSVMET PEMTSGENTG NAITATNEVA LTPTVSGGGK GTYRRRMSVV RPSLDADEFM NLLHGSDPVK LELNRLENEV RDKDRELSEA QAEIKALRLS
101: ERLREKAVEE LTDELTRVDE KLKLTESLLE SKNLEIKKIN DEKKASMAAQ FAAEATLRRV HAAQKDDDMP PIEAILAPLE AELKLARHET VKLQDDNKAL
201: DRLTKSKEAA LLDAERTVQS ALAKASMVDD LQNKNQELMK QIEICQEENK ILDRMHRQKV AEVEKLTQSV RELEEAVLAG GAAANAVRDY QRKVQEMNEE
301: RKTLDRELAR AKVTANRVAT VVANEWKDAN DKVMPVKQWL EERRILQGEM QQLRDKLAIT ERTAKSEALL KDKYLLRLKV LEETLRPSSA SSRNTTDGRS
401: SSNGPSRRQS LGGAESISKL TSNGFLPKRS PSFQLRSSGS STILKHAKGT SKSFDGGSRS LDRGKKLLNV TGPNFNSSKS VDGVKDNETE TTSWKSNQDE
501: KRTDLPVTET EDTVPGLLYD LLQKEVVALR KAGHEKDQSL KDKDDAIEML AKKVETLTKA MEVEAKKMRR EVAAMEKEVA AMRVEKEQEN RANRLGNSKG
601: PVNSSQLLPG RSVARSGLTR TQ
Best Arabidopsis Sequence Match ( AT1G24764.1 )
(BLAST)
001: MSDVSGDGDL SATVTEHEVT PQPPVSSATY PSLTVSASYK ESSGGKSSSK RRPIRPSFDA AADNEFITLL HGSDPVKVEL NRLENEVRDK DRELGEANAE
101: IKALRLSERQ REKAVEELTE ELTKLDEKLK LTESILESKN LEIKKINEEK KASMAAQFAA EATLRRVHAA QKDDDMPPIE AILAPLEAEL KLARSEIGKL
201: QEDNRALDRL TKSKEAALLE AERTVEAAMA KAAMVDDLQN KNQELMKQIE ICQEENKILD RMHRQKVAEV EKLTQTVREL EEAVLAGGAA ANAVRDYQRK
301: FQEMNEERKT LDRELARAKV TANRVATVVA NEWKDGNDKV MPVKQWLEER RFLQGEMQQL RDKLAITDRA AKSEAQLKEK FQLRLKVLEE TLRGTSSSAT
401: RNTPEARSMS NGPSRRQSLG GAENLQKFTS NGALSKKAPA SQMRHSLSIN STSVLKNAKG TSKSFDGGTR SVDRGKALLN GPGNYSFNKA TDDSKEAESG
501: NGWKENSEEK PQSEDPEAAT EDSVPGVLYD LLQKEVVSLR KASNEKDQSL KDKDDAIEML AKKVETLTKA MEVEAKKMRR EVAAMEKEVA AMRVEKDQDA
601: RAKRFSNSKS PSNTAQILAG RAAGRSGGLT KSTQ
Arabidopsis Description
ATMAP70-2microtubule-associated proteins 70-2 [Source:TAIR;Acc:AT1G24764]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.